Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq448 102 2e-16 seq1 96.9 8e-15 seq450 91.5 3e-13 >seq448 Length=23513712 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| ||||| ||||| ||||||||| |||| Sbjct 4228040 AAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCTGACACCATCGAGAAT 4228099 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || || || | || |||||| Sbjct 4228100 GTCAAGGCTAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTTC 4228159 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | ||| || |||| |||||| | ||||| ||||| Sbjct 4228160 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCC 4228219 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 4228220 ACCCTGCAC 4228228 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || |||||| | || || ||| || || || ||||| Sbjct 10409746 AAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCGGATACTATCGAAAAT 10409805 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || |||||| || |||||||||||| || || || | || ||||| Sbjct 10409806 GTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTT 10409864 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| |||||||||| | || | | || || ||| | ||||| ||||| Sbjct 10409865 CGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATTCAGAAGGAGTC 10409924 Query 206364 TACTCTTCAC 206373 ||| | ||| Sbjct 10409925 CACTTTGCAC 10409934 >seq1 Length=23542271 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||||||||| || || || || Sbjct 6278517 CAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTCGAGCCATCCGAT 6278458 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| || || || || ||||| || || || Sbjct 6278457 ACCATTGAGAACGTTAAGGCAAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAG 6278398 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||||||||||||| |||| || ||| | ||| || |||| |||||| || Sbjct 6278397 CGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATC 6278338 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| || |||||| Sbjct 6278337 CAGAAGGAGTCGACCCTTCAC 6278317 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||||||||| || || || || || | || Sbjct 6278733 AAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCCGATACCATTGAGAAC 6278674 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || || || | | |||||| Sbjct 6278673 GTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAGCGTTTGATCTTC 6278614 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||| || ||| | ||| || |||| |||||| ||||||| ||||| Sbjct 6278613 GCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 6278554 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 6278553 ACCCTTCAC 6278545 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/204 (71%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||| ||||| || || || || Sbjct 6282724 CAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCATCCGAT 6282665 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | ||| || ||| | ||| || || || || ||||| || || |||| Sbjct 6282664 AGCATTGAAAACGTTAAGGCCAGGATCCACGACAAGGAGGGAATCCCCCCAGA---TCAA 6282608 Query 206293 -AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || || ||||||||||||||||||||||| || ||| | ||| || ||||||||||| Sbjct 6282607 CAGCGTTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGACGCACTCTGTCCGATTACAAC 6282548 Query 206350 GTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||| || || || |||||| Sbjct 6282547 ATCCAGAAGGAATCGACCCTTCAC 6282524 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||||||||| || || || || || | || Sbjct 6277593 AAGACCCTCACTGGCAAGACCATCACTTTGGAGGTCGAGCCATCCGATACCATTGAGAAC 6277534 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || || || | | || ||| Sbjct 6277533 GTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAGCGTTTGATTTTC 6277474 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||| || ||| | ||| || |||| |||||| ||||||| ||||| Sbjct 6277473 GCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 6277414 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | || ||| | || || Sbjct 6277413 ACCCTTCACTTGGTCTTGCGTCTGCG 6277388 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| ||||| || || || || || | || Sbjct 6278049 AAGACCCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCATCCGATACCATTGAGAAC 6277990 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || || || | | || ||| Sbjct 6277989 GTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAGCGTTTGATTTTC 6277930 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||| || ||| | |||||| |||| |||||| ||||||| ||||| Sbjct 6277929 GCCGGAAAGCAGCTGGAGGACGGACGCACTTTGTCCGACTACAACATCCAGAAGGAGTCG 6277870 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | || ||| | || || Sbjct 6277869 ACCCTTCACTTGGTCTTGCGTCTGCG 6277844 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||| ||||| || || || || Sbjct 6278289 CAGATCTTTGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCATCCGAT 6278230 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || ||||| || || || Sbjct 6278229 ACCATTGAGAACGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAG 6278170 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || ||||||||||||||| |||| || ||| | ||| || |||| |||||| || Sbjct 6278169 CGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATC 6278110 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || |||||| | || ||| | || || Sbjct 6278109 CAGAAGGAGTCGACCCTTCACTTGGTCTTGCGTCTGCG 6278072 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||| ||||| || || || || Sbjct 6282496 CAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGCCATCCGAT 6282437 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || || || || ||||| | ||| || || || || ||||| || || ||| Sbjct 6282436 ACCATCAAACACGTCAAAGCCAG-GATCCACGACAAGGATGGAATCCCCCCAGATCATCA 6282378 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || ||||||||||||||| |||| || ||| | ||| || |||| |||||| | Sbjct 6282377 GCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAACAT 6282318 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 |||||| ||||| || |||||| Sbjct 6282317 CCAGAAGGAGTCGACCCTTCAC 6282296 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| ||||| || || || || || | || Sbjct 6277821 AAGACCCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCATCCGATACCATTGAGAAC 6277762 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || || || | | || ||| Sbjct 6277761 GTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAGCGTTTGATTTTC 6277702 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||| || ||| | ||| || |||| |||||| ||||||| ||||| Sbjct 6277701 GCCGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAACATCCAGAAGGAGTCG 6277642 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 6277641 ACTCTTCAC 6277633 >seq450 Length=28110227 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| | || || || ||| ||||| | || || ||| Sbjct 3899911 ACCGGAAAGACCATCACCCTCGAGGTAGAGCCTTCGGACACCATTGAGAATGTTAAGGCT 3899852 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || |||||| || || || | || ||||||||||| ||| Sbjct 3899851 AAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 3899792 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || |||||| | || || ||||||||||| ||||||| ||||| || |||||| Sbjct 3899791 CAGCTTGAGGATGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCCACCCTTCAC 3899732 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| | || || || || |||||| | || || ||| Sbjct 3900139 ACCGGAAAGACCATCACCCTCGAGGTAGAGCCATCGGACACAATTGAGAATGTTAAGGCT 3900080 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || |||||| || || || | || ||||||||||| ||| Sbjct 3900079 AAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 3900020 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || |||||| | || || ||||||||||| ||||||| ||||| || |||||| Sbjct 3900019 CAGCTTGAGGATGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCCACCCTTCAC 3899960 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| | || || || ||| ||||| | || || ||| Sbjct 3900367 ACCGGAAAGACCATCACCCTCGAGGTAGAGCCTTCGGACACCATTGAGAATGTTAAGGCT 3900308 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || |||||| || || || | || ||||||||||| ||| Sbjct 3900307 AAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 3900248 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || |||||| | || || ||||||||||| ||||||| ||||| || |||||| Sbjct 3900247 CAGCTTGAGGATGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCCACCCTTCAC 3900188 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| | || || || || |||||| | || || ||| Sbjct 3900823 ACCGGAAAGACCATCACCCTCGAGGTAGAGCCATCGGACACAATTGAGAATGTTAAGGCT 3900764 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || |||||| || || || | || ||||||||||| ||| Sbjct 3900763 AAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 3900704 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || |||||| | || || ||||||||||| ||||||| ||||| || |||||| Sbjct 3900703 CAGCTTGAGGATGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCCACCCTTCAC 3900644 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| | || || || || |||||| | || || ||| Sbjct 3901279 ACCGGAAAGACCATCACCCTCGAGGTAGAGCCATCGGACACAATTGAGAATGTTAAGGCT 3901220 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || |||||| || || || | || ||||||||||| ||| Sbjct 3901219 AAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 3901160 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || |||||| | || || ||||||||||| ||||||| ||||| || |||||| Sbjct 3901159 CAGCTTGAGGATGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCCACCCTTCAC 3901100 Score = 89.7 bits (98), Expect = 1e-12 Identities = 146/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| || || | || ||||| || ||||| | || || || Sbjct 3901762 AAAATG---CAGATCTTTGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAG 3901706 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || ||||| | || || ||| ||||| ||||| || ||||||||| || Sbjct 3901705 CCCTCGGACACCATTGAGAATGTTAAGGCTAAGATCCAAGACAAGGAAGGAATTCCCCCA 3901646 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || || | || ||||||||||| ||||| ||||||| ||| | || || ||||| Sbjct 3901645 GATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGAT 3901586 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||| | ||||| ||||| || |||||| Sbjct 3901585 TACAACATTCAGAAGGAGTCCACCCTTCAC 3901556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181792484312270