Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq448 306 4e-78 seq450 125 7e-24 >seq448 Length=23513712 Score = 306 bits (338), Expect = 4e-78 Identities = 1185/1841 (64%), Gaps = 46/1841 (2%) Strand=Plus/Plus Query 146571 CGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTG 146630 ||| || || || ||||||| ||| ||||| || |||||||| ||| | ||| || | Sbjct 10325270 CGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTGAGACCAGCTTTCCAGGAATA 10325329 Query 146631 ATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTG 146690 | || || || |||| | | || | ||||| ||||| | || ||||| || Sbjct 10325330 AAAATGTATGGAGGTCAGCTTTCCATAGTTTGGCTCGGCCACATGTATGTTGAACGACTG 10325389 Query 146691 GCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCTTCAT 146750 || ||||||||||| || || ||||| ||||| | |||| || || | || Sbjct 10325390 ACTCTGATCTATGAACGCACCACGATCGGCGGCCATTTTAATCGTGGACTTGACCGAGAT 10325449 Query 146751 TTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAAT 146810 |||||| | || |||||||| | || | || || ||||||||||| || Sbjct 10325450 TTCCCACACCGTCTTGTACAGATCGCGCACCTTCGGGGGTATGGTCTCAATGTTTTGGAT 10325509 Query 146811 AGAGCCCTTGTGCGCAAAAATAGTGTTTCGT-ATTTCGGGCGTGTAA-AGGTTTAGTTTA 146868 || || || | | || || ||| | || ||| ||| | | || || | Sbjct 10325510 CGATCCTCTGCTGGATATGATC-TGGTTCTTCATGTCGT-CGTCCCACAAGTCCAGCTCG 10325567 Query 146869 ATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTG 146928 | ||||| | |||| || |||||||| || || ||||| | ||| || || | | Sbjct 10325568 GTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGG 10325627 Query 146929 AGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTG 146988 || | || | ||| | ||||| || || ||||||||||| | ||| || || || Sbjct 10325628 GTGTATATGTTTGTGGTGTAGGGCTCGAAGGATTCATTATTGCCCATTATCTGAGCTGTA 10325687 Query 146989 GTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTG 147048 | ||| || |||||| || || | || || || || | ||||| | | ||| Sbjct 10325688 GATGCCGTGGGCATGGGAGCAACAAGCAGAGAGTTCCGGACACCGTGCATCCTAATGGAC 10325747 Query 147049 TCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGG 147108 |||||||| | ||||||||||||| || ||| | || |||||||||||| || Sbjct 10325748 TCCTTCAATTTCTGCCAGTCCCACAGGTTCGTTGGCACCTTGTCCCACATGTCGTATTGC 10325807 Query 147109 AGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCC 147168 | | ||| || | || ||||| || | || ||| || ||| ||| ||| Sbjct 10325808 AAAATTCCCTTGCTTACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCC 10325867 Query 147169 AATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGG 147228 | ||| ||||| || || | || |||||||| || |||||| || || | || | | Sbjct 10325868 AGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCGAATATCTGCTGATTCAAG 10325927 Query 147229 ACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCC 147288 | ||||||||||| ||||| || | ||||| || | || ||||| || || ||| Sbjct 10325928 AGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAAGCATCAGCGAATCCC 10325987 Query 147289 TGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGC-TGCGCTTCGCGCTCGCTATGGG 147347 || ||||| | ||| | || || ||| | ||| | ||| | || || | || Sbjct 10325988 TGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGATTTCCTTGCCTCTGGC-AGAGG 10326046 Query 147348 ATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTT 147407 ||| | |||| |||||| |||||||| || || || | || || | | || Sbjct 10326047 ATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTTCCTT 10326106 Query 147408 GAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGA 147467 ||| |||| ||||||||| ||| ||| || | ||| | ||| | ||| || || Sbjct 10326107 GAGCTTCTTGAAATCATACGTCT--TCTCCGGCGT-TACAAACATGTTGAGGGCAATGGA 10326163 Query 147468 CGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAG 147527 |||| |||||||| || |||| || | || ||| | |||||||| | |||| Sbjct 10326164 GGCCAAGTTGCAGACTGCTATCTCATCCGGTGCGGAGTATTCTACGATTTCCGTACACAA 10326223 Query 147528 GTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTT 147587 ||||||||| || || |||| ||| ||||| ||||| |||| ||||| ||||| || Sbjct 10326224 GTTGCTGCACTTGATTGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTT 10326283 Query 147588 GAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAG 147644 ||| ||||||||||| |||||||| ||||||| |||| ||| ||||| ||| Sbjct 10326284 GAACAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACC---ACAG 10326340 Query 147645 GTCCTGCGCTCGCACCCGCTGCCGATAG--CGGCCCTCGTTTTCGTACCGCTCGTACAAC 147702 | || || | | ||| | | | | | || ||||| | ||||| |||||||| | Sbjct 10326341 GGATTGAGC-CTTAACCG-TTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGC 10326398 Query 147703 CGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGC 147762 || || || ||||| | ||| || || ||||||| || || ||||| ||| Sbjct 10326399 TTTTCGAATTCATCGCCCCACACGTCGTGGAGACCAGGACACTTGTGGGGGCACATGAGC 10326458 Query 147763 GACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTAC 147822 ||||| ||| || | |||||| ||| || ||||| || | |||||| ||||| Sbjct 10326459 GACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAA 10326518 Query 147823 ATAAGATCGCGCGCTTTGCAATCCTCGGC---GCCCATGTTGCGTTTCAAATTAAGCACG 147879 | |||||||| || || || ||| | ||| |||| |||| | || | Sbjct 10326519 AACAGATCGCGTGC---GCGATTCTCTTCTTTGCCTGTGTTCTTCTTCAGTTCCAGGAAC 10326575 Query 147880 CTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTCCG 147939 | ||| || | |||||||||||| | ||| | ||| | ||||| |||||| ||| Sbjct 10326576 TCAAAGACATCCGAGTGCCAGGGTTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCG 10326635 Query 147940 ---CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCG 147996 ||||| || |||| || ||| || || || || | || ||| || ||| || Sbjct 10326636 CCTCCCTGATCCACATAACGTGCCACATTATTGAAAACCCTCAGCATTGGAACCAACCCA 10326695 Query 147997 CTCGCAGTGCCGTTGGTG----GAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCAC 148052 ||| ||| || || ||| ||| ||| |||| || || | ||| || Sbjct 10326696 TTCGAAGTTCCATTTGTGCCGCAAATCGAT----GTGCCCTTTGCACGAATGCAGTGTAC 10326751 Query 148053 GTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTA 148112 ||||| |||||||| ||| || |||| || || ||||| | ||| | | || | Sbjct 10326752 GTTAAGTCCAATGCCACCGGCGGACTTGGAGATCATGGCGCACTGCTCCACAGACTTGAA 10326811 Query 148113 GATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAAT 148172 ||||| |||||| |||| | | | | || | |||||||| ||| ||||| Sbjct 10326812 AATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACACGACGACAACTGCGG--- 10326868 Query 148173 CCG---CGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--TTTTTGACTC 148227 ||| || | || | || || ||||| || ||||| || | | || Sbjct 10326869 CCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGCGTGAAGTAGCGCTCCGATAG 10326928 Query 148228 ATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACG 148287 | || ||| || || | || | ||||| || || || || || || | ||| ||| Sbjct 10326929 AAGAT--TATAAGTTTCCACGGCCGCATCGATATCCTCTCCATGGATTCCGATCGCCACG 10326986 Query 148288 CGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCA 148347 ||||| ||||| ||||| ||||| || || | | ||| | ||||| ||||| | Sbjct 10326987 CGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTCTTTTGAGCAGATAGGAA 10327046 Query 148348 TTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATC 148388 || ||||| ||| | ||||| || || || |||| || Sbjct 10327047 CGCTCCAGGGTCTTGAAGCCAAAATAGTTATAGCCAAAGTC 10327087 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | ||||| || | | ||||| || |||||||| ||||| | ||| Sbjct 10409952 ACGCAGGCGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGT 10409893 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | |||| |||||||| ||||||||||| || || Sbjct 10409892 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 10409833 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||| || ||| | | ||| | |||||| | ||| || || || | Sbjct 10409832 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAG 10409773 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || || || | ||| |||||||| Sbjct 10409772 AGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 10409731 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | ||||| || | | | ||||| || ||||||||||||||| || || Sbjct 4228246 ACGCAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 4228187 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || |||| |||| |||||||| |||||||| || ||||| Sbjct 4228186 GCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCC 4228127 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || ||||| || || || | | || | || || | |||||||| || | Sbjct 4228126 CTCCTTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAA 4228067 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || ||||| | ||| |||||||| Sbjct 4228066 GGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4228025 >seq450 Length=28110227 Score = 125 bits (138), Expect = 7e-24 Identities = 231/338 (68%), Gaps = 3/338 (1%) Strand=Plus/Plus Query 51541 CAATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCG 51600 |||| || || | |||||| |||| || | || | ||||||||| | |||||||||| Sbjct 11112464 CAATGCCAATAACGCCGCACCCGATGCGGGCACCAGCGTTGCCCGTTGACTTGCTCAGCT 11112523 Query 51601 GATGGTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGAACCACCAGACTGCGGCCAACGA 51660 || | |||| ||||| ||| | ||||| || || | |||| || | || Sbjct 11112524 CGTGTCCACCCTGGCCAAGATCATCGGCATCGGCGTGCACGACAACGGTGCGTCCGATGA 11112583 Query 51661 CGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCGT 51720 ||| | ||||||| ||||| ||| | |||| | ||| || | |||| || || Sbjct 11112584 TGCTGTCGGCGCCGAAGAGCGTAATCTTGGAGTCGGTGATGTTGACCTTGGTGGGGCAGT 11112643 Query 51721 TGGACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAG 51780 | | | ||||| | ||||||| ||||| | ||| || || | || |||| Sbjct 11112644 CGC---CGGTGGCCTCAATGTTGCCCAGATCGCCCAGGTGACGATTCTCGTCGACGGGAG 11112700 Query 51781 CGCCGTGGTCGCTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGG 51840 |||| || || |||| || |||||||| || | |||| ||||||| ||| || Sbjct 11112701 CGCCATGCTCCTTGCCATACGGATTGAAGTGCGGTCCGGACGACATGCAGCCATTGGTGT 11112760 Query 51841 TGTCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCC 51878 |||| ||||| ||||||||||||||||||||||| ||| Sbjct 11112761 TGTCACCGAACTCGTGCACGTGGAATCCGTGCAGACCC 11112798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476600059213200