Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_025963.1 Length=139981 Score E Sequences producing significant alignments: (Bits) Value seq448 87.8 2e-12 >seq448 Length=23513712 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/209 (70%), Gaps = 8/209 (4%) Strand=Plus/Minus Query 5340 CTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTC----TCTTGGC 5395 |||||| |||| ||| || | ||||||||| || |||| |||| || ||| | Sbjct 11011833 CTCGCAAATGAACTGGGCGATGCGGTCGCCATGCTTCACCTCGAAA-TCAACATCTGAGT 11011775 Query 5396 CGAAGTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCCCGCTC 5455 || ||||| || || || || || || || || | ||| |||||| || || || | Sbjct 11011774 -GA--TTGAACAGGACGACGCCGAGATTGCCGCGATAATCCTCGTCCACCACACCGGCGC 11011718 Query 5456 CCACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCGTAGCAGC 5515 ||||||| | |||||| || ||||| || ||||| | || || ||||| |||||| ||| Sbjct 11011717 CCACATCAATGAAGTTCTTCACCGCCAGCCCGGATCGTGGGGCTACGCGTCCGTAGGAGC 11011658 Query 5516 CGTATGGCGGGTGGATCTGCAGATCGGTC 5544 | | || || | |||||||||||| Sbjct 11011657 CCTCCGGAACCTGCACTTGCAGATCGGTC 11011629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447800732413200