Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq448 131 1e-25 >seq448 Length=23513712 Score = 131 bits (144), Expect = 1e-25 Identities = 698/1092 (64%), Gaps = 26/1092 (2%) Strand=Plus/Plus Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697 ||||||||| || || | |||||| || || || || | |||||||||||| || || || Sbjct 10325249 CACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTT 10325308 Query 136698 TAAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGC 136757 | ||| | |||||||||| |||||| || | || || |||| | || ||||| Sbjct 10325309 GAGACCAGCTTTCCAGGAATAAAAATGTATGGAGGTCAGCTTTCCATAGTTTGGCTCGGC 10325368 Query 136758 CACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTT 136817 ||| | || | ||| || |||||||| ||| | | || || || |||||||| || Sbjct 10325369 CACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCATTTT 10325428 Query 136818 CAATAGTACTTTTTGCTTA-ATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCG 136876 ||| || || | | |||||||| | || || | || || || || || | Sbjct 10325429 -AATCGTGGACTTGACCGAGATTTCCCACACCGTCTTGTACAGATCGCGCACCTTCGGGG 10325487 Query 136877 GAATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATTT---TCATCATGAGAT 136933 | || || || || || | ||||| || | ||||| | || ||||| | Sbjct 10325488 GTATGGTCTCAATGTTTTGGATCGATCCTCTGCTGGATATGATCTGGTTCTTCATGTCGT 10325547 Query 136934 CAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTTGAT 136993 | ||| | | || ||| | || | | | ||| || || || || || Sbjct 10325548 C-GTCCC--ACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGA 10325604 Query 136994 ATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATTCGT 137053 ||||||| || || |||| || ||| | || | ||| | |||||||| ||||| | Sbjct 10325605 ATTCGCCGGACAGAACTCGCCGGGTGTATATGTTTGTGGTGTAGGGCTCGAAGGATTCAT 10325664 Query 137054 TGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTCC 137113 | || |||| ||||| || || | || || |||||| ||| | | || || |||| Sbjct 10325665 TATTGCCCATTATCTGAGCTGTAGATGCCGTGGGCATGGGAGCAACAAGCAGAGAGTTCC 10325724 Query 137114 GTAAACCGTGTACGGCCAATTGT-TGCTTGAGCTCTTTCCAGTTCCACAGATTGTTCGAT 137172 | | |||||| | | ||| | | ||| | | | ||||| |||||| ||||| | Sbjct 10325725 GGACACCGTGCATC-CTAATGGACTCCTTCAATTTCTGCCAGTCCCACAG---GTTCGTT 10325780 Query 137173 TGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCATAA 137232 | | | ||||| || | ||||||| ||| ||| | || || | | || Sbjct 10325781 GGCACCTTGTCCCACATGTCGTATTGCAAAATTCCCTTGCTTACCGGGCTGCCCTCGTAG 10325840 Query 137233 GAATCATATGTTCCGTGCAGTTTCG-CCAGTTCAATACTCTGGACTAGTGCGCCATAGTA 137291 | || |||| || | | || | | ||||||| || | | ||||||||||| Sbjct 10325841 GTTTCGTATGGACCTT-CGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTA 10325899 Query 137292 AATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATATC 137351 ||| |||||| | || | |||||| | ||||||| ||| ||||| || | | Sbjct 10325900 AATCGTTTCGAATATCTGCTGATTCAAGAGACCGGCTTCTTCGCTTTCGTACGGGAAACG 10325959 Query 137352 CAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTGTTTAAA 137411 || | | |||||||| || | ||| |||||||| || || | || | ||| | || Sbjct 10325960 CATGAGAATCAAAGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGCCTCAA 10326019 Query 137412 ATTTGATAT--TTGAGCGCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTATTGAGA 137469 ||| ||| | ||| | || | || |||||| |||| || || || | || ||| Sbjct 10326020 ATTGGATTTCCTTG-CCTCTGGC-AGAGGATAATAGTTGATATCAATTATCTTGTTTAGA 10326077 Query 137470 TTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATCGAAGCTTTTAGACTGT 137529 || || ||||| | ||| |||| | |||| | |||||| | | || | | Sbjct 10326078 TTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAATCATACGTCTTCTCCGG- 10326136 Query 137530 TTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTC-TGTATT 137588 |||| |||| | |||| |||||| ||||| |||||||| || || | || | | Sbjct 10326137 -CGTTA-CAAACATGTTGAGGGCAATGGAGGCCAAGTTGCAGACTGCTATCTCATCCGGT 10326194 Query 137589 GTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCAAATTCTT 137648 | || ||||| ||| ||||| | || | |||||| ||| |||| ||||| Sbjct 10326195 G-CGGAGTATTCTACGATTTCCGTACACAAGTTGCTGCACTTGATTGTGCCCACATTCTG 10326253 Query 137649 TTGATTGTTTTTCTCGTTG-ACGTGATCTTTATATATCATATACGGAGTTCCGGTTTCGA 137707 || ||| | ||| |||| | | | || || | | ||| |||||| ||||||| || | Sbjct 10326254 CTGGTTGCTCTTCCTGTTGCAAGCG-TCCTTGAACAGCATGTACGGATTTCCGGTCTCCA 10326312 Query 137708 CTTGAGTCTCAA 137719 |||| | ||||| Sbjct 10326313 CTTGCGCCTCAA 10326324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445083995918400