Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq448 298 6e-76 >seq448 Length=23513712 Score = 298 bits (330), Expect = 6e-76 Identities = 470/666 (71%), Gaps = 14/666 (2%) Strand=Plus/Plus Query 146841 GAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGTT 146900 ||| || || ||||||| |||| | | ||| | |||||||| |||||||| || | Sbjct 2968674 GAAGTCCTCGATGTCCTGCACCTGACGTTTAATGATCAGCTTGGGAAAGGGTCGCGGTGT 2968733 Query 146901 CCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAG 146960 | |||| || ||||| ||||| |||||||| ||||||||||| | ||| |||| Sbjct 2968734 GCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGTTCAGGTAGACGTGTGTGTCGCCCAT 2968793 Query 146961 GGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAG 147020 |||||| |||||||| |||||||| || || ||||| ||||| | ||||| ||||||||| Sbjct 2968794 GGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCACATGGGCAATCATGTGGGTGAGCAG 2968853 Query 147021 CGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAG 147080 | ||| ||| ||||||||||| || |||||||||||||| | |||||||| || Sbjct 2968854 GGCATAGGAGGCGATGTTGAAGGGTACGCCCAGGCCCATGTCTGCGCTTCTCTGGTATAG 2968913 Query 147081 CTGGCACGAGAGCTCCCCG------TCGGCCACGTAAAACTGGCACAGGATGTGGCACGG 147134 ||||||||| ||||| ||| |||| ||||||||||| || | ||||||||| Sbjct 2968914 CTGGCACGAAAGCTCACCGCGCTTCTCGGAGACGTAAAACTGCGCCAAGCAGTGGCACGG 2968973 Query 147135 CGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCT 147194 |||||| ||||| || | |||| || ||||| ||||| | | | || | | | Sbjct 2968974 CGGCAGGGCCATCTTTGGGATGTCCAGTGGATTCCAAGCCGACATGATGATGCGAC-GGT 2969032 Query 147195 CT-CGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCC 147253 || |||||| || | || ||||| ||| | ||||||||| | |||| ||| | Sbjct 2969033 CTGAGGGGTTATTCCTGATGGTGTCGATCACCTGGCGCAGCTGGTCGATCCCCTTGCCGC 2969092 Query 147254 CGTAGTTTGTC-CCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTAC 147312 |||| | ||| ||||| ||||| ||||| || |||||||| |||||||||||| Sbjct 2969093 TGTAG-TCGTCGTCGCAGGTGCCGTACTGCGCCCCGAAATGCCTCCATTGGAAGCCGTAC 2969151 Query 147313 ACTGGCCCCAGGTCGCC--GGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCGG 147370 || |||||||| || || ||| || || ||| ||| | | ||||| || Sbjct 2969152 ACCGGCCCCAGATCCCCAACGGC--TCGCCCCGTGAACCCCATCTTGTCCAGAAATTCTC 2969209 Query 147371 GGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGG 147430 ||| | || | ||||||||| ||| ||| || ||| ||| | |||||| Sbjct 2969210 TGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCGCCTGCAGCAGCTTGGCGTCCGTCT 2969269 Query 147431 AGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGG 147490 |||| | |||||| ||||||||||| ||| | | | ||||| | ||| |||| Sbjct 2969270 TGCCCGCCACGAACCACAGCAGCTCCTCGGCCACCGCGCGGAAGAAGACGCGCTTCGTGG 2969329 Query 147491 TCAGCA 147496 |||||| Sbjct 2969330 TCAGCA 2969335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583474360968000