Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq449 196 7e-44 seq448 96.9 5e-14 seq450 95.1 2e-13 >seq449 Length=25286936 Score = 196 bits (216), Expect = 7e-44 Identities = 316/449 (70%), Gaps = 9/449 (2%) Strand=Plus/Minus Query 1455864 CTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGA 1455923 |||| ||||||||||||||||||||| |||||| || ||||| || ||||||| ||| Sbjct 11984244 CTGAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTTGCCTTCTT-CGCCGCCTCCGA 11984186 Query 1455924 TGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGC 1455983 |||||||| ||||||||||| | ||||| | | ||||| || | | ||||| Sbjct 11984185 CGGCATCGTAAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGC 11984126 Query 1455984 ACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCT 1456043 ||||| || ||||| || ||||||||||| || ||| | ||||| || | ||| | Sbjct 11984125 ACGTTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACAGTGT 11984066 Query 1456044 CCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGA 1456103 |||||||||| ||| || || || | || || |||| ||| ||| ||||| Sbjct 11984065 TTTGATCGACACTTACATCCGTGATCCACACCAGCGAGAGTACCTGTTTAACGCTATCGA 11984006 Query 1456104 CACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGG 1456163 ||| ||||| | |||| | ||||| |||||||| || |||||| | | Sbjct 11984005 AACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATCTCCTCCAAA-- 11983948 Query 1456164 CCTCGAC--ACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCT 1456220 ||| | |||| | || || || ||| ||||||||| || ||||||||||| ||| Sbjct 11983947 --TCGGCCAACTTCGGGGAACGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCA 11983890 Query 1456221 CGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGC 1456280 ||||| ||| |||| || ||||| |||||||| || || ||||| || || | Sbjct 11983889 GCGGCAGCTTCGCTTCCATTTTCTGGCTTAAGAAGCGAGGTCTGATGCCTGG-ATTGACC 11983831 Query 1456281 TTTAGCAACGAATTTATCAGTCGCGACGA 1456309 || |||||| ||||| ||||||||| Sbjct 11983830 TTCTCCAACGAGCTTATCTCTCGCGACGA 11983802 >seq448 Length=23513712 Score = 96.9 bits (106), Expect = 5e-14 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||||||||||| || ||||||||| ||||||||||| |||||| | || || Sbjct 10326640 GGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTACCTGGAACCCTGGCACTCGGATGTC 10326581 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | ||||| || || |||||| ||||| | | ||||| | |||| ||| Sbjct 10326580 TTTGAGTTCCTGGAACTGAAGAAGAACACAGGCAAAGAA----GAGAATC--GCGCACGC 10326527 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 ||||| ||||||| |||||||| ||| || || ||| ||| ||| | || | | Sbjct 10326526 GATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAACGCGTGGAGGCCAACGGT 10326467 Query 261968 GACTGGTCGCTCTTTTGCCC 261987 || ||||||||| | ||||| Sbjct 10326466 GATTGGTCGCTCATGTGCCC 10326447 >seq450 Length=28110227 Score = 95.1 bits (104), Expect = 2e-13 Identities = 230/346 (66%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931 || || || ||||| || ||| ||| | | ||| |||| | || || | ||||||| Sbjct 4135423 AATCGTAGCATGGCGCAGCGGGACTGGATAGGCTCTATGATC-TTCTCGCTGGTGTTGCA 4135481 Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTG 332991 |||||||||||| || || || || | | | ||||||||| || || ||||| || Sbjct 4135482 GGCCAGGGCAAAACGAGTGGTGCTGCTGTAGATCTCCATGGTCCGGCGCAGTGCCTGCTG 4135541 Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051 ||| || ||| | || ||| |||||||| || || | |||||||| | || |||| Sbjct 4135542 GGCACCCTCCGTCATGCTGTCCGCCTCGTCCAGAATCACAATCTTGTGCCTGCCCCGCGG 4135601 Query 333052 CAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCG 333111 ||| ||| | | | || ||||| | ||||| || || || | || || Sbjct 4135602 CAGTGTCACCTTCTGCTGAGCAAACATCTTGATCTTGTTGCGGACCACATCGATTCCTCG 4135661 Query 333112 CTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCG 333171 || | || || || || ||||| || ||||| | | | | |||| ||| | | Sbjct 4135662 TTCATTGGAGGCATTCAGCTCGAGGACAGCCTCCTTGTAGCTGTCTCCCAGGAGAATCCT 4135721 Query 333172 CGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 ||||| ||| |||| | || ||||||||| ||| || |||||| Sbjct 4135722 GGCCAGACACTGGATGGTGGTTGTCTTGCCCACGCCAGGAGGACCC 4135767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177630835062940