Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq448 342 7e-89 seq449 127 3e-24 >seq448 Length=23513712 Score = 342 bits (378), Expect = 7e-89 Identities = 1194/1848 (65%), Gaps = 32/1848 (2%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || |||||||||| | || || || || || ||||||||||| |||||||| ||| Sbjct 10325253 GTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTGAGA 10325312 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || |||| || ||||| || || || || ||| |||| ||||| | | Sbjct 10325313 CCAGCTTTCCAGGAATAAAAATGTATGGAGGTCAGCTTTCCATAGTTTGGCTCGGCCACA 10325372 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 || || || | ||| ||||| ||||| ||||| || || | ||| || |||||||| || Sbjct 10325373 TGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCATTTTAATC 10325432 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGAT-ATCATCTGG--- 68609 | ||| | |||||||| | ||||| | | | | | | | || || Sbjct 10325433 GTGGACTTGACCGAGATTTCCCACACCGTCTTGTACA---GATCGCGCACCTTCGGGGGT 10325489 Query 68610 AAGG-CTCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCA 68667 | || ||| | ||||| || ||||| | |||||| || ||||| || || || Sbjct 10325490 ATGGTCTCAATGTTTTGGATCGATCCTCTGCTGGATATGATCTGGTTCTTCATGTCGTCG 10325549 Query 68668 TTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCC 68727 | |||||| | ||| |||| | | | | ||| | || || | || ||||| Sbjct 10325550 TCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGAATTCG 10325609 Query 68728 CCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTT 68787 || || | |||| || ||||| || || |||| || || || | ||||||||||| Sbjct 10325610 CCGGACAGAACTCGCCGGGTGTATATGTTTGTGGTGTAGGGCTCGAAGGATTCATTATTG 10325669 Query 68788 CCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGA 68847 |||| || ||||| || ||||| || ||||| || || || | | | || | | | Sbjct 10325670 CCCATTATCTGAGCTGTAGATGCCGTGGGCATGGGAGCAACAAGCAGAGAGTTCCGGACA 10325729 Query 68848 CCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACA 68907 || || | | || || || | | | ||| ||||| || | | ||| || Sbjct 10325730 CCGTGCATCCTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGTTCGTTGGCACCTTG 10325789 Query 68908 TTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAA 68967 | ||| | |||||||| | |||||| || ||| | || | || ||||| || Sbjct 10325790 TCCCACATGTCGTATTGCAAAATTCCCTTGCTTACCGGGCTGCCCTCGTAGGTTTCGTAT 10325849 Query 68968 GGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCG 69027 || ||||| | || ||||| || || || || || || || || ||||| |||||| Sbjct 10325850 GGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCG 10325909 Query 69028 AAAATCTTCTTATT---GAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGA 69084 || |||| || ||| |||| | |||||| || ||| | || || | | ||| Sbjct 10325910 AATATCTGCTGATTCAAGAGACCG---GCTTCTTCGCTTTCGTACGGGAAACGCATGAGA 10325966 Query 69085 ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAA 69144 || || ||||| || |||||||||| ||||| || | || | || ||| ||| || Sbjct 10325967 ATCAAAGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGA- 10326025 Query 69145 CTTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGA 69202 |||| || ||||| | ||||||||| || ||||| || || || || |||||| | Sbjct 10326026 -TTTCCTTGCCTCTGGCAGAGGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGG 10326084 Query 69203 CTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTA-----TAAC 69257 |||| || || ||||| || || |||||| | |||| ||| | || Sbjct 10326085 TAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAATCATA-CGTCT-TCTCCGGCGTTAC 10326142 Query 69258 AAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATA 69317 |||||| || || || | || || | || || ||||||| ||||| | | || Sbjct 10326143 AAACATGTTGAGGGCAATGGAGGCCAAGTTGCAGACTGCTATCTCATCCGGTGCGGAGTA 10326202 Query 69318 TTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACT 69377 || || || || ||||| | || || || ||||| || |||| ||| ||||| || || Sbjct 10326203 TTCTACGATTTCCGTACACAAGTTGCTGCACTTGATTGTGCCCACATTCTGCTGGTTGCT 10326262 Query 69378 CTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 69437 ||| |||| || ||||||||| | || || ||||| | || || || | || | || Sbjct 10326263 CTTCCTGTTGCAAGCGTCCTTGAACAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTC 10326322 Query 69438 GATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTC--TTGTAACGCTTCTCTTTT 69495 || || | ||| | | ||| || | || || ||| || ||||| Sbjct 10326323 AATGATGGCAAACCACAGGGATTGAGCCTTAAC--CGTTCGGTTGGCCCGACCCTCTTGC 10326380 Query 69496 TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACAT 69555 || |||| || ||| |||||||||||| ||||| || || | | |||||||| Sbjct 10326381 TCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACGTCGTGGAGACCAGGACAC 10326440 Query 69556 TCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCG 69615 | | || ||||| | ||||| || | | ||| || |||||||| || |||||| Sbjct 10326441 TTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCG 10326500 Query 69616 GGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttttt 69675 || ||||| || || ||| ||||| | | | ||| ||||| || ||||| || || Sbjct 10326501 GGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCTGTGTTCTTC 10326560 Query 69676 ttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACT 69735 || || || || ||||| | | ||| || ||||| ||||| || || || || | | | Sbjct 10326561 TTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGGTAAATGGCAAAGGCA 10326620 Query 69736 CCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGC 69795 || || || || ||||||||||| | || | || ||||| | || |||||| Sbjct 10326621 CCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAAACCCTCAGC 10326680 Query 69796 ATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGA 69855 || |||| | ||||| || | |||||||| || |||| | | || |||| ||| Sbjct 10326681 ATTGGAACCAACCCATTCGAAGTTCCATTTGTGCCGCAAATCGATGTGCCCTTTGCACGA 10326740 Query 69856 ATATTACTAATAGAT-AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTT 69914 || | | | | || || || || || || || ||||| | || || | | Sbjct 10326741 AT-GCAGTGTACGTTAAGTCCAATGCCACCGGCGGACTTGGAGATCATGGCGCACTGCTC 10326799 Query 69915 CAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGA 69974 || | | | || ||||| ||| || || ||||| | ||||| ||||| || Sbjct 10326800 CACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACACGACGA 10326859 Query 69975 CATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTT 70034 || || | | | || | || ||| | ||| || ||||| || ||||| | Sbjct 10326860 CAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGCGTGAAGTAGCG 10326919 Query 70035 TTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTAT 70094 || || || ||||| || ||||| | || | || |||||| ||| ||||| || Sbjct 10326920 CTCCGATAGAAGATTATAAGTTTCCACGGCCGCATCGATATCCTCTCCATGGATTCCGAT 10326979 Query 70095 CGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAG 70154 ||| || ||||||| ||||||||| ||||| ||| | | || ||| |||| | ||| Sbjct 10326980 CGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTCTTTTGAGCAG 10327039 Query 70155 GTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202 || || ||||| || || || ||||||||||| || |||||| Sbjct 10327040 ATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATAGCCAAAGTC 10327087 >seq449 Length=25286936 Score = 127 bits (140), Expect = 3e-24 Identities = 435/672 (65%), Gaps = 11/672 (2%) Strand=Plus/Plus Query 39317 ACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 39376 |||||||| ||||| || || || ||||| ||||| || || || || |||| Sbjct 11983478 ACTCCCATGCGCTGGTACTCCCCCACCTTCTTCTCAAAAAAGTTGGTCTTTCCATCCAGC 11983537 Query 39377 GATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAAT 39436 ||||| | |||||||| | ||| || || | | || || | ||| || || || Sbjct 11983538 GATATCATCTCCATGAAGTTAAAGGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAAC 11983597 Query 39437 TCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATT 39496 || | ||| | || || || || || ||||| ||||| || |||||||| Sbjct 11983598 TCCACGAGCAAACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATG 11983657 Query 39497 CCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCT 39556 || || | || || || || || || || || ||||| | || ||| | || || || Sbjct 11983658 CCAATCAAATTGACGGGCAGGGCATCGGTAAGGAACTCCTGCTCAATGGCCACCGCGTCG 11983717 Query 39557 GTTATTATC--GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTA 39614 || ||| |||| | | ||| | ||| | |||| | |||| ||||| | Sbjct 11983718 CGGATGATCTCGATGATGCG--CTCGCGCTTGGGTCGCTGCACCAGGTGTTGGAACATCA 11983775 Query 39615 AGCA-GGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||| ||| ||||| || || | |||||| || | | || | ||||| || || || Sbjct 11983776 -GCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTC 11983834 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAG 39733 | ||||||||| ||||| ||||| || ||||| || |||| ||| || || ||| Sbjct 11983835 AATCCAGGCATCAGACCTCGCTTCTTAAGCCAGAAAATGGAAGCGAAGCTGCCGCTGAAG 11983894 Query 39734 AAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATG- 39792 |||||||| || || || ||||| || | | | || ||| || ||| ||| | Sbjct 11983895 AAGATGCCCTCCACGGCGGCAAAGGCGATGATGCGTTCCCCG-AAGTTGGCCGATTTGGA 11983953 Query 39793 ---TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 ||||| | | ||||| || || || ||| ||| ||||| ||||| ||||| Sbjct 11983954 GGAGATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGC 11984013 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 ||||| || || | | | | ||| | || || || || || | ||| || Sbjct 11984014 GTTAAACAGGTACTCTCGCTGGTGTGGATCACGGATGTAAGTGTCGATCAAAACACTGTA 11984073 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 ||| || || || | ||| || || || |||||||| ||||| || || | ||| || || Sbjct 11984074 CATCTCCGAGTGCACGTTCTCCATGGCGATCTGAAAGCCGTAGAAGCAACGTGCCTCCGT 11984133 Query 39970 AATTTGTACCTC 39981 || || ||||| Sbjct 11984134 GATCTGCACCTC 11984145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686892743506800