Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq449 127 2e-24 seq448 120 2e-22 >seq449 Length=25286936 Score = 127 bits (140), Expect = 2e-24 Identities = 242/353 (69%), Gaps = 9/353 (3%) Strand=Plus/Minus Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 || ||||| || || || || ||||| || ||||| || || | || ||||| |||||| Sbjct 11984130 GAGGCACGTTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAGATGTAC 11984071 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGA---AGCATCGATTGTTTAAT 44047 ||| || |||| || || |||||| ||| ||| || || | | ||||||| Sbjct 11984070 AGTGTTTTGATCGACACTTACATCCGTGATCCACACCAGCGAGAGTACC---TGTTTAAC 11984014 Query 44048 GCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT-AAA 44106 || || ||||| | || || | || | || |||||||||||||| ||||| Sbjct 11984013 GCTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATCTCC 11983954 Query 44107 TTCAAAT--GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTC 44164 | ||||| | || || ||||| | |||| ||||| | ||||| ||||| ||| Sbjct 11983953 TCCAAATCGGCCAACTTCGGGGAACGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTC 11983894 Query 44165 TTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTG 44224 || || || || |||| || ||| | ||||| |||||| |||||||||| ||| Sbjct 11983893 TTCAGCGGCAGCTTCGCTTCCATTTTCTGGCTTAAGAAGCGAGGTCTGATGCCTGGATTG 11983834 Query 44225 ACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 || || || || ||| | || ||| || || ||||| || ||||| ||||| Sbjct 11983833 ACCTTCTCCAACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGC 11983781 >seq448 Length=23513712 Score = 120 bits (132), Expect = 2e-22 Identities = 277/418 (66%), Gaps = 6/418 (1%) Strand=Plus/Minus Query 41003 CCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACC 41062 ||| || || || ||| || ||||| ||| |||| | | |||||| |||| || Sbjct 2969031 CCGTCGCATCATCATGTCGGCTTGGAATCCACTGGACATCCCAAAGATGGCCCTGCCGCC 2968972 Query 41063 TTGTCATTTGTTATGTCAGTTTTACGTTTGCAAT------GGTGAACTGTCATGTCAATT 41116 || || | || ||||||||||| | | | ||||| || || || || | Sbjct 2968971 GTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGAAGCGCGGTGAGCTTTCGTGCCAGCT 2968912 Query 41117 GTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCT 41176 || || ||| | |||||||| || || || || || ||||| || ||||| || Sbjct 2968911 ATACCAGAGAAGCGCAGACATGGGCCTGGGCGTACCCTTCAACATCGCCTCCTATGCCCT 2968852 Query 41177 GCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTT 41236 |||||| | |||||||| || || || | | || || || || ||||||||||| | Sbjct 2968851 GCTCACCCACATGATTGCCCATGTGACGGGTCTGAAGCCGGGCGACTTTGTTCACACCAT 2968792 Query 41237 AGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAA 41296 || || ||| | ||| | || ||| |||||||| | | || |||||| || | Sbjct 2968791 GGGCGACACACACGTCTACCTGAACCACGTAGAGCCGCTGAAGGAGCAACTGGAGCGCAC 2968732 Query 41297 ACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTG 41356 ||| |||| ||||| | ||| | |||||||| || | |||| || || || | Sbjct 2968731 ACCGCGACCCTTTCCCAAGCTGATCATTAAACGTCAGGTGCAGGACATCGAGGACTTCCG 2968672 Query 41357 CATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGGACATG 41414 | |||| || ||| | ||| |||||||| | || |||||||| ||||||||| Sbjct 2968671 CTTCGAGGACTTTCAGATAGTCGACTACAATCCACATCCAAAAATCCAAATGGACATG 2968614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446941729350