Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq448 251 6e-62 seq1 93.3 4e-14 seq450 89.7 4e-13 >seq448 Length=23513712 Score = 251 bits (278), Expect = 6e-62 Identities = 999/1560 (64%), Gaps = 29/1560 (2%) Strand=Plus/Plus Query 130412 ACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCTGTTTTG 130471 |||||||| ||||||||||| | || ||||||||||||| ||| ||||| || |||||| Sbjct 10325250 ACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTG 10325309 Query 130472 AGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGGTAATTGGGTTGCGCC 130531 || ||| ||| |||| || ||| | || || || || || | ||| Sbjct 10325310 AGACCAGCTTTCCAGGAATAAAAATGTATGGAGGTCAGCTTTCCATAGTTTGGCTCGGCC 10325369 Query 130532 ACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCG 130591 || |||||||| ||| || ||||| || || || || | || || ||||| | Sbjct 10325370 ACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCATTTTA 10325429 Query 130592 AGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGT 130651 | | ||| || || ||||| | |||||||| ||||| | | | |||| Sbjct 10325430 ATCGTGGACTTGACCGAGATTTCCCACACCGTCTTGTACAGATCGCGCACCTTCGGGGGT 10325489 Query 130652 ATGCGCGCAATCGATTGAA-CGCTACCGTTGTTGGCTATAATTTCGTTGCGCATACTTTT 130710 ||| | |||| ||| | || | || || ||| ||| || | ||| ||| | Sbjct 10325490 ATGGTCTCAATGTTTTGGATCGAT-CCTCTGCTGGATATGATCTGGTTCTTCATGTCGTC 10325548 Query 130711 ATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTGAAAATC 130770 || |||| | |||| || || | |||||||| || | | || || || Sbjct 10325549 GTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGAATTC 10325608 Query 130771 ACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTT 130830 || | ||| || || | ||| ||||| | ||| | || || |||||||| || || Sbjct 10325609 GCCGGACAGAACTCGCCGGGTGTATATGTTTGTGGTGTAGGGCTCGAAGGATTCATTATT 10325668 Query 130831 GCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAG 130890 ||| | ||| || ||||||| ||| ||||||||| || || | ||||| || || | Sbjct 10325669 GCCCATTATCTGAGCTGTAGATGCCGTGGGCATGGGAGCAACAAGCAGAGAGTTCCGGAC 10325728 Query 130891 ACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTG-A 130949 ||||||| || | || |||||||| | ||| ||||| || || ||| | | Sbjct 10325729 ACCGTGCATCCTAATGGACTCCTTCAATTTCTGCCAGTCCCACAG----GTTCGTTGGCA 10325784 Query 130950 CATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATT 131009 | |||| |||||| || |||| | || || || || | || ||| ||| | | || Sbjct 10325785 CCTTGTCCCACATGTCGTATTGCAAAATTCCCTTGCTTACCGGGCTGCCCTCGTAGGTTT 10325844 Query 131010 CGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGG 131069 |||| |||||| | ||||| ||| ||| |||||||| || || || ||||| | Sbjct 10325845 CGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCG 10325904 Query 131070 TTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTA 131129 ||||| || || | ||| || | |||| | ||| ||||| || || ||| | Sbjct 10325905 TTTCGAATATCTGCTGATTCAAGAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGA 10325964 Query 131130 AAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAATTAC 131189 ||| ||||| || |||| ||||| || |||| |||||| || | || | ||||| Sbjct 10325965 GAATCAAAGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGG 10326024 Query 131190 ATTTACGCGAACATTCGGTG-GGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGC 131248 |||| | | | | | | |||||| ||| || |||||||| ||||||| ||| Sbjct 10326025 ATTTCCTTGC-CTCTGGCAGAGGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTG 10326083 Query 131249 ACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTT 131308 || || | ||||| || | || | ||||||| |||| | || | || Sbjct 10326084 GTAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAATCATACGTCT---TCTCCGGCGTT 10326140 Query 131309 ACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAA 131368 ||||| || | || || |||| || || ||||| | || || || | Sbjct 10326141 ACAAACATGTTGAGGGCAATGGAGGCCAAGTTGCAGACTGCTATCTCATCCGGTGCGGAG 10326200 Query 131369 TACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTG 131428 || | || ||||| | ||||| || |||| ||| || ||||||| ||| || || ||| Sbjct 10326201 TATTCTACGATTTCCGTACACAAGTTGCTGCACTTGATTGTGCCCACATTCTGCTGGTTG 10326260 Query 131429 CTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTT 131488 || || || | ||||||| ||| |||||| || | || || || ||||| | Sbjct 10326261 CTCTTCCTGTTGCAAGCGTCCTTGAACAGCATGTACGGATTTCCGGTCTCCACTTGCGCC 10326320 Query 131489 TCAATAATGT--ATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTATTGGCCG---C 131543 ||||| ||| | | | || | || |||| || | || |||||| | Sbjct 10326321 TCAATGATGGCAAACCACAGGGATT--GAGCC-----TTAACCGTTCGGTTGGCCCGACC 10326373 Query 131544 GTTTT--TCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCCAAATT 131601 | || ||||| || ||||||| | |||| || | | ||| || || | | Sbjct 10326374 CTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACGTCGTGGAGACC 10326433 Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661 ||||| | | ||| ||||| |||||||| | ||||| || || || ||||| || Sbjct 10326434 AGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAA 10326493 Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCAT 131721 | ||| || | ||| | ||||| |||||||| | || ||||||||| | || | Sbjct 10326494 GAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCTGT 10326553 Query 131722 AAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 | || |||| | | || || || | |||| ||||||||||||| || | || Sbjct 10326554 GTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGGTAAATGGC 10326613 Query 131782 CATTGCGCCTTTGCGCTTACCGCCT---TGATTAACATGACGAACCATGTTGTTGTATAC 131838 | || || ||||| |||||| |||| |||| ||| ||| || ||| | || Sbjct 10326614 AAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAAAC 10326673 Query 131839 GCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATT 131898 | || ||| || |||| || || | ||||||| |||| ||| | |||| || Sbjct 10326674 CCTCAGCATTGGAACCAACCCATTCGAAGTTCCATTTGTGCCGCAAATCGATGTGCCCTT 10326733 Query 131899 GGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCA 131958 || | || ||| ||||| |||||||| || ||| || | || ||||| | ||||| Sbjct 10326734 TGCACGAATGCAGTGTACGTTAAGTCCAATGCCACCGGCGGACTTGGAGATCATGGCGCA 10326793 >seq1 Length=23542271 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| ||||| || | || || || || || || ||||||||| Sbjct 6278292 TGCCACCACGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 6278351 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| |||| || ||||| || |||||| | || | |||||| ||||| || | Sbjct 6278352 ACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGG 6278411 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | ||||| || || |||||| || | | | || | || || | ||||| | Sbjct 6278412 GGATTCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTCTCAATGGTATCGGATGGCT-CG 6278470 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || | ||| || | ||||| || || || ||||||||||| ||||| Sbjct 6278471 ACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 6278520 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| ||||| || | || || || || || || ||||| ||| Sbjct 6282499 TGCCACCACGCAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGG 6282558 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| |||| || | ||| || |||||| | || | |||||||||||| || | Sbjct 6282559 ACAGAGTGCGTCCGTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGG 6282618 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | ||||| || ||| |||| || || | | |||| | | || | |||| || Sbjct 6282619 GGATTCCCTCCTTGTCGTGGATCCTGGCCTTAACGTTTTCAATGCTATCGGATGGC-TCG 6282677 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || | || || | ||||| || || || ||||||||||| ||||| Sbjct 6282678 ACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 6282727 >seq450 Length=28110227 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || ||||| ||||| ||| || | |||| ||||||| Sbjct 3901551 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 3901610 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || |||||| | || |||||||| ||||| || || | || || || || | Sbjct 3901611 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGG 3901670 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||| | || || || || || || || | || Sbjct 3901671 ATCTTAGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTACCTCGAGGGTGATGGTCTTT 3901730 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| ||| ||||||||||| ||||| Sbjct 3901731 CCGGTCAAAGTCTTCACAAAGATCTGCAT 3901759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424924715479440