Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq448 183 4e-41 >seq448 Length=23513712 Score = 183 bits (202), Expect = 4e-41 Identities = 642/989 (65%), Gaps = 19/989 (2%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| |||||||| ||||| || || ||| |||||||||| |||| || || || || || Sbjct 10325630 GTATATGTTTGTGGTGTAGGGCTCGAAGGATTCATTATTGCCCATTATCTGAGCTGTAGA 10325689 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| || || | | ||| ||| || | ||| | | | | ||| || Sbjct 10325690 TGCCGTGGGCATGGGAGCAACAAGCAGAGAGTTCCGGACACCGTGCATCCTAATGGACTC 10325749 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTT-CACCTT--CCCACATGTCAAACTG 110883 ||| | | |||||| | || || ||| |||||| |||||||||| | || Sbjct 10325750 CTTCAATTTCTGCCAGTCCCAC---AGGTTCGTTGGCACCTTGTCCCACATGTCGTATTG 10325806 Query 110884 AAGCAC-CCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | | |||||| |||| ||||| ||||||| || | ||||| || | | Sbjct 10325807 CAAAATTCCCTTGCTTACCGGGCTG-CCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGG 10325865 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 ||| ||| ||||| || |||| || | | || || ||||| || || | ||||| Sbjct 10325866 CCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCGAATATCTGCTGATTCA 10325925 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 |||||| || || | | | | || | ||| || |||| |||| | Sbjct 10325926 AGAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAAGCATCAGCGAATC 10325985 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG- 111121 | |||| ||| | || | || | ||| | || ||| || || | || ||| | Sbjct 10325986 CCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGATTTCCTTGCC-TCTGGCAGA 10326044 Query 111122 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 111181 |||||| | || | ||||| | |||||||||||||||||| ||||| |||| ||| Sbjct 10326045 GGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTTCC 10326104 Query 111182 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 111241 | || || | ||||| | || |||| | ||| || | ||||| || Sbjct 10326105 TTGAGCTTCTTGAAATCATACGT---CTTCTCCGGCGTTACAAACATGTTGAGGGCAATG 10326161 Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 || ||||| ||||| || || |||||||| | | ||| |||| ||||| ||||| Sbjct 10326162 GAGGCCAAGTTGCAGACTGCTATCTCATCCGGTGCGGAGTATTCTACGATTTCCGTACAC 10326221 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 |||||| | ||| || || |||| ||||| ||||| |||||| ||||||| || ||| Sbjct 10326222 AAGTTGCTGCACTTGATTGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 10326281 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-- 111419 ||| | |||||||| || | || |||||| || | | | || || ||| | Sbjct 10326282 TTGAACAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGG 10326341 Query 111420 CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGG 111479 || | || || | ||||||||| ||||| |||||| || ||| || Sbjct 10326342 GATTG--AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCT 10326399 Query 111480 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 111539 ||| || || || ||| | ||||| |||||| || ||||| || || | || | Sbjct 10326400 TTTCGAATTCATCGCCCCACACGTCGTGGAGACCAGGACACTTGTGGGGGCACATGAGCG 10326459 Query 111540 ACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 111599 |||| | ||| |||| || || |||||||| || || || |||||||||| ||| Sbjct 10326460 ACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAA 10326519 Query 111600 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCC 111658 | ||||| | ||| |||||| | ||| ||| || | | || |||||||| Sbjct 10326520 ACAGATCGCGTGCGCGATTCTCTTCTTTGCCTGTGTT-CTTCTTCAGTTCCAGGAACTCA 10326578 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATA 111687 | || ||||| |||||| || || || || Sbjct 10326579 AAGACATCCGAGTGCCAGGGTTCCAGGTA 10326607 Score = 120 bits (132), Expect = 4e-22 Identities = 186/263 (71%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 ||||| || ||| | || |||||||||||||| | ||||||||| || ||||||||| Sbjct 19449827 TCTTTGCCTCCCGACAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTAATGTTG 19449886 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCACC 181924 || | ||| | | | | |||| || ||||| || ||| | ||||| || || || Sbjct 19449887 TTGGCACCCACAAAATTCTGAGCCAGATTCACGATTGTCATCTG-TAGGGATACCTCTCC 19449945 Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATC 181984 |||||| || |||||| | ||||| || || | | | ||| |||||||||| ||| Sbjct 19449946 GTGGTGATAGGCTGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCACG 19450005 Query 181985 TTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 ||| ||| | | |||||||| ||||||| |||| ||| ||||| | ||||| Sbjct 19450006 CTTGTCATTCCTCTTGAAGCAAGTGAACATCACCTTCCGCTGACCCGGCTTCAAGCCATC 19450065 Query 182045 CGCCATATGGGCAATAGAGCGCT 182067 | ||| | | ||| ||||||| Sbjct 19450066 CACCAGACTAGGAATGGAGCGCT 19450088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628017319752000