Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq448 183 4e-41 seq449 98.7 1e-15 >seq448 Length=23513712 Score = 183 bits (202), Expect = 4e-41 Identities = 638/986 (65%), Gaps = 15/986 (2%) Strand=Plus/Minus Query 104618 TATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGT 104677 || || || || |||||| ||||| || | |||||||| || || ||| ||| Sbjct 10326607 TACCTGGAACCCTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAGAACACAGGC 10326548 Query 104678 GACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATG 104737 | || ||| || |||||||| || | ||| || ||||| || |||||||||||| Sbjct 10326547 AAAGAAGAGAATCGCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATG 10326488 Query 104738 AAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTC 104797 || | || |||| | || ||||||| ||| | || || ||||| ||||||||| Sbjct 10326487 AAACGCGTGGAGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAAGTGTCCTGGTCTC 10326428 Query 104798 TCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGG 104857 ||| | ||| || || || ||| || ||| || |||||| |||| |||||| Sbjct 10326427 CACGACGTGTGGGGCGATGAATTCGAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCGG 10326368 Query 104858 GCGACTGCGACGGTGCCAGCTGCCGAT--GTGTGGAAAGCTATTCTCAAGTCTCAAACCG 104915 || | ||||| ||| | || ||||| || || | || | ||| | Sbjct 10326367 GCCAACCGAACGGTTAAGGCT--CAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTGG 10326310 Query 104916 AGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGA 104975 |||| || | || |||||||| | ||| ||||| || ||| ||||| || || ||| Sbjct 10326309 AGACCGGAAATCCGTACATGCTGTTCAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGA 10326250 Query 104976 ATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 105035 || |||| |||||| | ||| | ||||| |||||| | |||| | | | Sbjct 10326249 ATGTGGGCACAATCAAGTGCAGCAACTTGTGTACGGAAATCGTAGAATACTCCGCACCGG 10326190 Query 105036 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA 105095 |||||| || || || ||| | || || || || ||| || || ||| || ||| Sbjct 10326189 ATGAGATAGCAGTCTGCAACTTGGCCTCCATTGCCCTCAACATGTTTGTAACGCCGGAG- 10326131 Query 105096 CAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAA 105155 ||||| | ||||| | || ||| | ||||| || || | || |||||||| |||| Sbjct 10326130 --AAGACGTATGATTTCAAGAAGCTCAAGGAAGTCACCAAGATAGTTACCAAAAATCTAA 10326073 Query 105156 ACAGAGTTATTGATAGAAATTTTTA-CCCCGTTGAGACTGCTCGTAAATCTAATATGAGA 105214 ||| | ||||||| || | ||| || | ||| || | ||||| ||| |||| Sbjct 10326072 ACAAGATAATTGATATCAACTATTATCCTCTGCCAGA-GGCAAGGAAATCCAATTTGAGG 10326014 Query 105215 CACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 105274 |||||||| | || | ||| ||||||| |||| |||| || ||||| || | Sbjct 10326013 CACCGTCCCGTGGGCATTGGTATTCAGGGATTCGCTGATGCTTTGATTCTCATGCGTTTC 10325954 Query 105275 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCAC 105334 | | || ||| ||||| | ||| || ||||| || || || || | Sbjct 10325953 CCGTACGAAAGCGAAGAAGCCGGTCTCTTGAATCAGCAGATATTCGAAACGATTTACTAT 10325894 Query 105335 GCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 105394 | ||| | || || || | || |||| || || |||||||| ||||||| ||| Sbjct 10325893 GGCGCCTTGGAAGCCAGCTGCGAACTGGCCCAGACCGAAGGTCCATACGAAACCTACGAG 10325834 Query 105395 GGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGG--AAGGTGAGACCAAG 105451 || || | | |||||| | | |||| || ||||||| |||||| | | | Sbjct 10325833 GG-CAGCCCGGTAAGCAAGGGAATTTTGCAATACGACATGTGGGACAAGGTGCCAACGAA 10325775 Query 105452 CTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 105511 | | | |||||| | | ||||| ||| | | | | ||| | || ||| | Sbjct 10325774 C--CTGTGGGACTGGCAGAAATTGAAGGAGTCCATTAGGATGCACGGTGTCCGGAACTCT 10325717 Query 105512 CTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 105571 || || | ||||| ||||| || || || || || || || |||| |||||||||| | Sbjct 10325716 CTGCTTGTTGCTCCCATGCCCACGGCATCTACAGCTCAGATAATGGGCAATAATGAATCC 10325657 Query 105572 TTTGAACCCTACACGACGAACATCTA 105597 || || |||||||| || ||||| || Sbjct 10325656 TTCGAGCCCTACACCACAAACATATA 10325631 >seq449 Length=25286936 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 94811 TCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATT 94870 || |||| ||||| || ||||| ||||||||| || |||| | |||| | Sbjct 11983925 TCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGCTTCCATTTTCT 11983866 Query 94871 GGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTG 94930 |||| |||||||||||||| ||||| || | |||||||||||||||||||||||| | Sbjct 11983865 GGCTTAAGAAGCGAGGTCTGATGCCTGGATTGACCTTCTCCAACGAGCTTATCTCTCGCG 11983806 Query 94931 ACGAGGGACTCCACCAAGAGTTTGCGGTG 94959 ||||||| | ||| || ||||| ||| Sbjct 11983805 ACGAGGGCTTGCACTGCGACTTTGCCGTG 11983777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583247166278800