Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq448 168 7e-37 seq449 95.1 1e-14 >seq448 Length=23513712 Score = 168 bits (186), Expect = 7e-37 Identities = 496/758 (65%), Gaps = 10/758 (1%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||| |||||| || || |||| ||||| || || | |||||| || ||| Sbjct 10326162 GAGGCCAAGTTGCAGACTGCTATCTCATCCGGTGCGGAGTATTCTACGATTTCCGTACAC 10326221 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 || || ||||||| ||||| | |||| ||||||||||||| ||| || |||||| Sbjct 10326222 AAGTTGCTGCACTTGATTGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 10326281 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 ||| | ||||||||| | |||||||| || || || | | | | ||| | | Sbjct 10326282 TTGAACAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGG 10326341 Query 79237 TCCCGGGCCCGGACAACCTTC--TTGTACCGACCCTGTGCGACGTACGTCCGGTACAACT 79294 | ||| || | ||| ||| |||||||| | |||| || ||||| || Sbjct 10326342 GATTGAGCCTTAAC--CGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCT 10326399 Query 79295 CGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGT 79354 | ||| | || || | || ||| | || || || |||| ||| |||||||| || Sbjct 10326400 TTTCGAATTCATCGCCCCACACGTCGTGGAGACCAGGACACTTGTGGGGGCACATGAGCG 10326459 Query 79355 GCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414 ||| || ||| ||| || | ||||||||| || || ||||||||||| | Sbjct 10326460 ACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAA 10326519 Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474 | || ||||| || |||| || | ||| |||| ||| || || || || | Sbjct 10326520 ACAGATCGCGTGCGCGATTCTCTTCTTTGCCTGTGTTCTTCTTCAGTTCCAGGAACTCAA 10326579 Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534 || || | |||||| || ||||| || ||||| || | ||| ||||||||||| | Sbjct 10326580 AGACATCCGAGTGCCAGGGTTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCTC 10326639 Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594 |||| | || || || ||| || |||||||| | ||||| || || | || | Sbjct 10326640 CCTGATCCACATAACGTGCCACATTATTGAAAACCCTCAGCATTGGAACCAACCCAT--T 10326697 Query 79595 CGACG--CCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGA 79651 ||| | || || || ||| || ||| || | || |||||| | | | || | Sbjct 10326698 CGAAGTTCCATTTGTGCCGCAAATCGATGTGCCCTTTGCACGAATG-CAGTGTACGTTAA 10326756 Query 79652 TTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGC 79711 ||| ||||| |||| |||||||||| ||||||| || | | || | | |||| Sbjct 10326757 GTCCAATGCCACCGGCGGACTTGGAGATCATGGCGCACTGCTCCACAGACTTGAAAATGC 10326816 Query 79712 CCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCG 79771 ||||||| |||||| | |||| | | ||||| || ||||| ||| || ||| | Sbjct 10326817 CCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACACGACGACAACTGCGGCCGGTTTG 10326876 Query 79772 TACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG 79809 | | ||| || || || |||| || ||||||||| Sbjct 10326877 TGGCAGCGGCAAACAGTGTGGGCGATGCATGCGTGAAG 10326914 >seq449 Length=25286936 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 59980 AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTA 60039 |||| |||| || ||||| |||||| || ||||||||| ||| ||| | | | Sbjct 11983931 AACGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGCTTCCA 11983872 Query 60040 TTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTT 60099 |||||||||| || ||||| || || ||||| || ||| |||||||||||||| || | Sbjct 11983871 TTTTCTGGCTTAAGAAGCGAGGTCTGATGCCTGGATTGACCTTCTCCAACGAGCTTATCT 11983812 Query 60100 CCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG 60134 | || ||||||||| | || || ||||| ||| Sbjct 11983811 CTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTG 11983777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548511978232800