Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq448 159 4e-34 seq449 123 3e-23 >seq448 Length=23513712 Score = 159 bits (176), Expect = 4e-34 Identities = 305/446 (68%), Gaps = 4/446 (1%) Strand=Plus/Plus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || || |||||||| || ||||| |||| | |||||| | || || || Sbjct 19449645 ATCCAGTTCCTATGCCCTCGGCTCCGTTTACCAATACCATCGGTATGATGGGCAGATACC 19449704 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | ||||| | || ||| || || |||| | ||| | ||||| | || ||| | Sbjct 19449705 ATAGTGGCTCGATCTTTTGGCCATCGTCCACCTGGTAATCCAAAAGTGGATCGTCCAAAG 19449764 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 ||| | | || |||| |||| ||| || ||||| ||||| || | |||||| Sbjct 19449765 GATGGTAGATGAGTCGCGTCAAGGGAGACATTATAGTGAAAATGTAACGAGCGCTGGCGC 19449824 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 ||| ||||| || | || || || ||||| || || ||||| || || || | || Sbjct 19449825 AATCTTTGCCTCCCGACAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTAATGT 19449884 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173 ||||||| ||||| ||||||||||||| |||||| || || ||| || | || | Sbjct 19449885 TGTTGGCACCCACAAAATTCTGAGCCAGATTCACGATTGTCATCTGTAGGGATACCTCTC 19449944 Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC-C 152232 |||||||||| || | | |||||| | |||| | | ||| |||||||||| || | Sbjct 19449945 CGTGGTGATAGGCTGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 19450004 Query 152233 G-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACC 152291 | | |||| ||| |||||| || | | | |||||||| ||||| || ||||| || Sbjct 19450005 GCTTGTCA--TTCCTCTTGAAGCAAGTGAACATCACCTTCCGCTGACCCGGCTTCAAGCC 19450062 Query 152292 GTCCACCACGTGAGGAATCGAACGCT 152317 ||||||| |||||| || |||| Sbjct 19450063 ATCCACCAGACTAGGAATGGAGCGCT 19450088 Score = 147 bits (162), Expect = 2e-30 Identities = 211/293 (72%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAG-CAAGACGCGTACCGAATT 117362 ||||||||||||||||| ||| || ||| ||||| || | |||| || ||||| |||| Sbjct 19449799 AGTGAAAATGTAACGAGCGCTGGCGCAATCTTTGCCTCCCGACAAG-CGGGTACCAAATT 19449857 Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 | || | ||||| | || || | ||||||||| |||||||| || ||||||| || | Sbjct 19449858 GACCGCGTGGCTCAAGCAGATTAATGTTGTTGGCACCCACAAAATTCTGAGCCAGATTCA 19449917 Query 117423 CAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 | || || || ||| |||| || |||||||| || | | ||||||||| | | Sbjct 19449918 CGATTGTCATCTGTAGGGATACCTCTCCGTGGTGATAGGCTGACATCTCCGCCACTGATC 19449977 Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGAC--GTCAGGTTCTTCTTGAGGCAGGCATAAAT 117540 | | ||||| |||||||||| || | |||| ||| |||||| ||| | | || Sbjct 19449978 CGGATAGCTGGGCCACCTTCACCTCACGCTTGTCA--TTCCTCTTGAAGCAAGTGAACAT 19450035 Query 117541 CACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCT 117593 |||||| ||||||| ||||||| |||||| ||| ||| || || |||| Sbjct 19450036 CACCTTCCGCTGACCCGGCTTCAAGCCATCCACCAGACTAGGAATGGAGCGCT 19450088 >seq449 Length=25286936 Score = 123 bits (136), Expect = 3e-23 Identities = 312/467 (67%), Gaps = 13/467 (3%) Strand=Plus/Plus Query 74808 CCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAG 74867 |||||||| || || |||||||| | ||| || |||| | |||| || ||||||||| Sbjct 11983838 CCAGGCATCAGACCTCGCTTCTTAAGCCAGAAAATGGAAGCGAAGCTGCCGCTGAAGAAG 11983897 Query 74868 ATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA---TCGGAAGTC 74924 ||||| || || |||||||||| | ||||| | |||| || | ||| | Sbjct 11983898 ATGCCCTCCACGGCGGCAAAGGCGATGATGCGTTCCCCGAAGTTGGCCGATTTGGAGGAG 11983957 Query 74925 ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGG 74984 ||||| | | | ||||| || || || || || || || || | || ||||| || | Sbjct 11983958 ATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTA 11984017 Query 74985 AAGAGGCTTGCCTTCTCT--TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACG 75042 || ||| | | || || | ||||| || | |||| |||| || |||| Sbjct 11984018 AACAGG--TACTCTCGCTGGTGTGGATCACGGATGTAAGTGTCGATCAAAACACTGTACA 11984075 Query 75043 TCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCA 75101 ||||||| || | ||| || ||| ||| | ||||||| | || ||||| | Sbjct 11984076 TCTCCGAGTGCACGTTCTCCATGG-CGATCTGAAAGCCGTAGAAGCAACGTGCCTCCGTG 11984134 Query 75102 ATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGG 75159 ||||| || |||| |||| || | | ||||| | ||||||||||| |||| Sbjct 11984135 ATCTGCACCTCCTGACTGAAGCGCTCCA--CCAGGTTCTCGTTTACGATGCCGTCGGAGG 11984192 Query 75160 CGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCC 75219 ||||||| || || || || ||| || |||||||| ||||| | || || || Sbjct 11984193 CGGCGAAGAAGGCAAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCC 11984252 Query 75220 AATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266 |||| | |||||| | |||||| | ||||||||| ||||||||| Sbjct 11984253 AATCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACAGTCCAGAAA 11984299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547203208826000