Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq448 251 6e-62 >seq448 Length=23513712 Score = 251 bits (278), Expect = 6e-62 Identities = 411/590 (70%), Gaps = 8/590 (1%) Strand=Plus/Plus Query 29832 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTAT 29891 |||| |||||||||||| || | ||| || || ||||||||| || |||| | Sbjct 2968709 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGT 2968768 Query 29892 CCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 29951 |||||||||||| | ||| |||| | |||| ||||| || ||||| | || || || | Sbjct 2968769 TCAGGTAGACGTGTGTGTCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCA 2968828 Query 29952 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 30011 | || || ||||||| ||||| || | ||| ||||||||| |||||||| || || | Sbjct 2968829 CATGGGCAATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAAGGGTACGCCCAGGC 2968888 Query 30012 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG------TCGCTCACGT 30065 ||||||| | |||||||| ||||| ||||| ||||| ||| ||| |||| Sbjct 2968889 CCATGTCTGCGCTTCTCTGGTATAGCTGGCACGAAAGCTCACCGCGCTTCTCGGAGACGT 2968948 Query 30066 AAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCC 30125 ||||||| || | ||||||||| || || ||||| | ||| || |||| Sbjct 2968949 AAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGTGGATTCC 2969008 Query 30126 AGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTT 30185 | || ||| ||||||||| | |||| ||||| ||||||||| ||| | | | Sbjct 2969009 AAGCCGACATGATGATGCGACGGTCTGAGGGGTTATTCCTGATGGTGTCGATCACCTGGC 2969068 Query 30186 GCAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCG 30244 ||||||| || | |||| | || |||||| | | || || | ||||| || ||| Sbjct 2969069 GCAGCTGGTCGATCCCCTTGCCGCTGTAGTCGTCGTCGCAGGTGC-CGTACTGCGCCCCG 2969127 Query 30245 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30304 ||||||||||| ||||| ||||||||||| ||||| || || | | | | ||| Sbjct 2969128 AAATGCCTCCATTGGAAGCCGTACACCGGCCCCAGATCCCCAACGGCTCGCCCCGTGAAC 2969187 Query 30305 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCA 30364 ||| ||||||||| ||| |||||||| | ||| | |||||||| | || |||| | Sbjct 2969188 CCCATCTTGTCCAGAAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCGCC 2969247 Query 30365 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30414 ||| |||| || || || |||||||||||||||||||| Sbjct 2969248 TGCAGCAGCTTGGCGTCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTC 2969297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406301139932040