Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq448 203 3e-47 >seq448 Length=23513712 Score = 203 bits (224), Expect = 3e-47 Identities = 442/658 (67%), Gaps = 8/658 (1%) Strand=Plus/Plus Query 6542 AGCCGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCA 6601 ||| |||| | |||||||||||||| || | || |||| || || || | || || Sbjct 2968753 AGCGGCTCTACGTGGTTCAGGTAGACGTGTGTGTCGCCCATGGTGTGAACAAAGTCGCCC 2968812 Query 6602 GGAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTG 6661 || || ||| ||||| || ||||||| |||||||| || || || |||||| Sbjct 2968813 GGCTTCAGACCCGTCACATGGGCAATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTG 2968872 Query 6662 AACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCC- 6720 || || || || | ||||||||| | || || || |||||||| || ||||| || Sbjct 2968873 AAGGGTACGCCCAGGCCCATGTCTGCGCTTCTCTGGTATAGCTGGCACGAAAGCTCACCG 2968932 Query 6721 --ATTC---GCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGG 6775 ||| | |||||| || || | | ||||||||| || || |||||| ||| Sbjct 2968933 CGCTTCTCGGAGACGTAAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGG 2968992 Query 6776 AGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAG 6835 | ||| || ||||| || |||| | ||| | | ||| ||||| | | | | Sbjct 2968993 ATGTCCAGTGGATTCCAAGCCGACATGATGATGCGACGGTCTGAGGGGTTATTCCTGATG 2969052 Query 6836 GTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCG-AATAGTCCGCTTCGCTCCC 6894 ||||||||||| | ||||||||| || |||| | ||| ||||| | |||| Sbjct 2969053 GTGTCGATCACCTGGCGCAGCTGGT-CGATCCCCTTGCCGCTGTAGTCGTCGTCGCAGGT 2969111 Query 6895 CCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTC 6954 | |||| |||||| || || ||||| ||||| ||||| ||||| |||| || || | Sbjct 2969112 GCCGTACTGCGCCCCGAAATGCCTCCATTGGAAGCCGTACACCGGCCCCAGATCCCCAAC 2969171 Query 6955 CTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGAT 7014 | || | ||||||| |||||||||||| |||| || | || | |||||||| Sbjct 2969172 GGCTCGCCCCGTGAACCCCATCTTGTCCAGAAATTCTCTGGAGCTGTTCCCATCCCAGAT 2969231 Query 7015 CTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAG 7074 | ||| | | | ||| ||||| || ||| ||| ||||||||||||||| Sbjct 2969232 GTGCACATTCTTCGCCTGCAGCAGCTTGGCGTCCGTCTTGCCCGCCACGAACCACAGCAG 2969291 Query 7075 CTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCG 7134 ||||||| |||| | || | || || ||||| ||||||| ||||| | ||| Sbjct 2969292 CTCCTCGGCCACCGCGCGGAAGAAGACGCGCTTCGTGGTCAGCAAAGGAAAGGAGTTCCG 2969351 Query 7135 AAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCC 7192 | || | | || ||| ||||||||||||| || || ||| | | || |||||| Sbjct 2969352 CATGTCGAAGCGCATCTGACTGCCGAACACGGACAGAGTGCCCACCTCCGTGCGGTCC 2969409 Score = 203 bits (224), Expect = 3e-47 Identities = 442/658 (67%), Gaps = 8/658 (1%) Strand=Plus/Minus Query 34153 GGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCG 34212 |||||| || | | ||| || || ||||||||||||| ||| || | | || | || Sbjct 2969409 GGACCGCACGGAGGTGGGCACTCTGTCCGTGTTCGGCAGTCAGATGCGCTTCGACATGCG 2969350 Query 34213 GGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCT 34272 | | ||||| ||||||| ||||| || || | || | |||| ||||||||| Sbjct 2969349 GAACTCCTTTCCTTTGCTGACCACGAAGCGCGTCTTCTTCCGCGCGGTGGCCGAGGAGCT 2969290 Query 34273 GCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGAT 34332 ||||||||||||| ||| ||| || ||||| ||| | | | ||| | || Sbjct 2969289 GCTGTGGTTCGTGGCGGGCAAGACGGACGCCAAGCTGCTGCAGGCGAAGAATGTGCACAT 2969230 Query 34333 CTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGA 34392 |||||| | || | || |||| |||||||||||| ||||||| | || | | Sbjct 2969229 CTGGGATGGGAACAGCTCCAGAGAATTTCTGGACAAGATGGGGTTCACGGGGCGAGCCGT 2969170 Query 34393 GGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGG 34452 || || |||| ||||| ||||| ||||| ||||| || || |||||| |||| | Sbjct 2969169 TGGGGATCTGGGGCCGGTGTACGGCTTCCAATGGAGGCATTTCGGGGCGCAGTACGGCAC 2969110 Query 34453 GAGCGAAGCGGACTATT-CGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCT 34511 |||| | ||||| ||| | |||| || ||||||||| | |||||||||||| Sbjct 2969109 CTGCGACGACGACTACAGCGGCAAGGGGATCG-ACCAGCTGCGCCAGGTGATCGACACCA 2969051 Query 34512 TGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCC 34571 | | | ||||| ||| | | ||| | |||| || ||||| || ||| ||| Sbjct 2969050 TCAGGAATAACCCCTCAGACCGTCGCATCATCATGTCGGCTTGGAATCCACTGGACATCC 2968991 Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGC---GAAT---G 34625 | |||||| || || ||||||||| | | || || |||||| | ||| | Sbjct 2968990 CAAAGATGGCCCTGCCGCCGTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGAAGCGCG 2968931 Query 34626 GGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCA 34685 | ||||| || |||||||| || || || | ||||||||| | || || || |||| Sbjct 2968930 GTGAGCTTTCGTGCCAGCTATACCAGAGAAGCGCAGACATGGGCCTGGGCGTACCCTTCA 2968871 Query 34686 ACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTG 34745 |||| || || || |||||||| ||||||| || ||||| ||| || || | Sbjct 2968870 ACATCGCCTCCTATGCCCTGCTCACCCACATGATTGCCCATGTGACGGGTCTGAAGCCGG 2968811 Query 34746 GGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCT 34803 | || | || || || |||| || | || |||||||||||||| | |||| ||| Sbjct 2968810 GCGACTTTGTTCACACCATGGGCGACACACACGTCTACCTGAACCACGTAGAGCCGCT 2968753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448251921866400