Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 3e-14 >seq1 Length=23542271 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || ||||| |||||||| || |||| |||| ||||| |||||||| Sbjct 6277950 GATCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTTTGTCCGAC 6277891 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| || | || ||||| |||||| ||||||| ||| Sbjct 6277890 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTCTTGCGTCTGCGTGGTGGC 6277837 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || ||||| |||||||| || |||| |||| ||||| ||||||| Sbjct 6277494 GATCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGAC 6277435 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| || | || ||||| |||||| ||||||| ||| Sbjct 6277434 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTCTTGCGTCTGCGTGGTGGC 6277381 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || ||||| |||||||| || |||| |||| ||||| ||||||| Sbjct 6278178 GATCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGAC 6278119 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| || | || ||||| |||||| ||||||| ||| Sbjct 6278118 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTCTTGCGTCTGCGTGGTGGC 6278065 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || ||||| |||||||| || |||| |||| ||| | ||||||| Sbjct 6277722 GATCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGAC 6277663 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| ||| | || ||||| ||||| ||||||| ||| Sbjct 6277662 TACAACATCCAGAAGGAGTCGACTCTTCACTTGGTCCTGCGTCTGCGTGGTGGC 6277609 Score = 82.4 bits (90), Expect = 5e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || ||||| |||||||| || | || |||| ||||| ||||||| Sbjct 6277266 GATCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTCGAGGACGGACGCACTCTGTCCGAC 6277207 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 ||||||||||| || ||| || | || ||||| ||||| ||||||| |||| Sbjct 6277206 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTCCTGCGTCTGCGTGGTGGCG 6277152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355854289673490