Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq450 134 9e-27 seq448 125 5e-24 seq1 113 3e-20 >seq450 Length=28110227 Score = 134 bits (148), Expect = 9e-27 Identities = 152/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || || | || ||||| || ||||| ||||| || || || Sbjct 3901762 AAAATGCAGATCTTTGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCC 3901703 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| |||| ||| |||| | || | | ||||| ||||| | || ||||| Sbjct 3901702 TCGGACACCATTGAGAATGTTAAGGCTAAGA-TCCAAGACAAGGAAGGAATTCCCCCAGA 3901644 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || |||||||| ||||||||||||| |||||| | |||||| Sbjct 3901643 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTA 3901584 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 3901583 CAACATTCAGAAGGAGTCCAC 3901563 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| ||||| || || | || Sbjct 3899935 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCTTCG 3899876 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || | | ||||| || || | || |||||||| Sbjct 3899875 GACACCATTGAGAATGTTAAGGCTAAGA-TCCAAGACAAGGAGGGAATTCCCCCAGATCA 3899817 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || || || | |||||| | ||||||||| Sbjct 3899816 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGATTACAA 3899757 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 3899756 CATCCAGAAGGAGTCCAC 3899739 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| ||||| || || | || Sbjct 3900163 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCATCG 3900104 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || | | ||||| || || | || |||||||| Sbjct 3900103 GACACAATTGAGAATGTTAAGGCTAAGA-TCCAAGACAAGGAGGGAATTCCCCCAGATCA 3900045 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || || || | |||||| | ||||||||| Sbjct 3900044 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGATTACAA 3899985 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 3899984 CATCCAGAAGGAGTCCAC 3899967 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| ||||| || || | || Sbjct 3900391 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCTTCG 3900332 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || | | ||||| || || | || |||||||| Sbjct 3900331 GACACCATTGAGAATGTTAAGGCTAAGA-TCCAAGACAAGGAGGGAATTCCCCCAGATCA 3900273 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || || || | |||||| | ||||||||| Sbjct 3900272 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGATTACAA 3900213 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 3900212 CATCCAGAAGGAGTCCAC 3900195 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| ||||| || || | || Sbjct 3900847 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCATCG 3900788 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || | | ||||| || || | || |||||||| Sbjct 3900787 GACACAATTGAGAATGTTAAGGCTAAGA-TCCAAGACAAGGAGGGAATTCCCCCAGATCA 3900729 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || || || | |||||| | ||||||||| Sbjct 3900728 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGATTACAA 3900669 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 3900668 CATCCAGAAGGAGTCCAC 3900651 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| ||||| || || | || Sbjct 3901303 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCATCG 3901244 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || | | ||||| || || | || |||||||| Sbjct 3901243 GACACAATTGAGAATGTTAAGGCTAAGA-TCCAAGACAAGGAGGGAATTCCCCCAGATCA 3901185 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || || || | |||||| | ||||||||| Sbjct 3901184 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGATTACAA 3901125 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 3901124 CATCCAGAAGGAGTCCAC 3901107 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| ||||| || || || || Sbjct 3899707 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCCTCG 3899648 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || | | ||||| || || | || |||||||| Sbjct 3899647 GACACCATTGAGAATGTTAAGGCTAAGA-TCCAAGACAAGGAGGGAATTCCCCCAGATCA 3899589 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || || || | |||||| | ||||||||| Sbjct 3899588 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGATTACAA 3899529 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 3899528 CATCCAGAAGGAATCGAC 3899511 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| ||||| || || | || Sbjct 3900619 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCATCG 3900560 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || || || || || | || |||||||| Sbjct 3900559 GACACCATTGAGAATGTGAAGGCCAAGA-TTCAGGATAAGGAGGGAATCCCCCCAGATCA 3900501 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || || || | |||||| | ||||||||| Sbjct 3900500 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGATTACAA 3900441 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 3900440 CATCCAGAAGGAGTCCAC 3900423 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| ||||| || || | || Sbjct 3901075 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCTTCG 3901016 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || | | ||||| || || | || |||||||| Sbjct 3901015 GACACCATTGAGAATGTTAAGGCTAAGA-TCCAAGACAAGGAGGGAATTCCCCCAGATCA 3900957 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || ||||| || || || || | |||||| | ||||||||| Sbjct 3900956 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGATTACAA 3900897 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 3900896 CATTCAGAAGGAGTCCAC 3900879 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| ||||| || || | || Sbjct 3901531 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCATCG 3901472 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || || || || || | || |||||||| Sbjct 3901471 GACACCATTGAGAATGTGAAGGCCAAGA-TTCAGGATAAGGAGGGAATCCCCCCAGATCA 3901413 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || ||||| || || || || | |||||| | ||||||||| Sbjct 3901412 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGATTACAA 3901353 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 3901352 CATCCAGAAGGAGTCCAC 3901335 >seq448 Length=23513712 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| |||||||| ||||||||||| || || |||||||| || || || | Sbjct 10409728 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCG 10409787 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| ||| | |||| | ||| || ||| ||||||||||| | || |||||| Sbjct 10409788 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 10409847 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || || ||||| || |||||||| | ||||| | || || Sbjct 10409848 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 10409907 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| || || |||||||| || || || || Sbjct 10409908 AACATTCAGAAGGAGTCCACTTTGCACTTGGT 10409939 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || || ||||| | || || || | | Sbjct 4228025 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 4228084 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || || || || || | || |||||||| Sbjct 4228085 GACACCATCGAGAATGTCAAGGC-TAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCA 4228143 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || ||||| || | |||||| | ||| ||||| Sbjct 4228144 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAA 4228203 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 4228204 CATTCAGAAGGAGTCCAC 4228221 >seq1 Length=23542271 Score = 113 bits (124), Expect = 3e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| ||||||||||| |||||||| || || || |||||| | || ||||| | Sbjct 6278751 AATATGCAAATTTTCGTTAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCA 6278692 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||| || |||| | || || ||||| || || | || ||||| Sbjct 6278691 TCCGATACCATTGAGAACGTTAAGGC-CAAGATCCAGGACAAGGAGGGAATCCCCCCAGA 6278633 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||||| || || ||||| || || ||||| |||| ||||||| | ||| || Sbjct 6278632 TCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTA 6278573 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 6278572 CAACATCCAGAAGGAGTCGAC 6278552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338001896549960