Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq450 143 6e-29 seq448 131 4e-25 seq1870 127 5e-24 >seq450 Length=28110227 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||| || ||||| || || |||| |||||||||| || || Sbjct 3900170 ACGAAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGT 3900229 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| || || || || || || ||||| || Sbjct 3900230 GCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCC 3900289 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| ||| ||| || |||||||| || | || || || | Sbjct 3900290 CTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTACCTCGAG 3900349 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || |||||||| || | ||| | ||||| Sbjct 3900350 GGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3900391 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||| || ||||| || || || | |||||||||| || || Sbjct 3900854 ACGAAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGT 3900913 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| || || || || || || ||||| || Sbjct 3900914 GCGTCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCC 3900973 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| ||| ||| || |||||||| || | || || || | Sbjct 3900974 CTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTACCTCGAG 3901033 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || |||||||| || | ||| | ||||| Sbjct 3901034 GGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3901075 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || ||||| || |||| |||||||||| || || | ||||| Sbjct 3899496 AGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCC 3899555 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || ||||| || ||||||||| Sbjct 3899556 TCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCT 3899615 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || |||||||| |||| || || || | ||||| ||| Sbjct 3899616 TGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTACCTCGAGGGTGATGGTC 3899675 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | ||| | ||||| Sbjct 3899676 TTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3899707 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || ||||| || || |||| |||||||||| || || | ||||| Sbjct 3899724 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCC 3899783 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || ||||| || ||||||||| Sbjct 3899784 TCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCT 3899843 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || |||||||| || | || || || | ||||| ||| Sbjct 3899844 TGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTACCTCGAGGGTGATGGTC 3899903 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | ||| | ||||| Sbjct 3899904 TTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3899935 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || ||||| || || || | |||||||||| || || | || ||| Sbjct 3901548 AGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGTCCGTCT 3901607 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| || || || || || || ||||| |||||||||||| Sbjct 3901608 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCCTTGTCT 3901667 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || |||||||| |||| || || || | ||||| ||| Sbjct 3901668 TGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTACCTCGAGGGTGATGGTC 3901727 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || |||||||| || | || | |||||||| Sbjct 3901728 TTTCCGGTCAAAGTCTTCACAAAGATCTGCATTTT 3901762 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || ||||| || || |||| |||||||||| || || | ||||| Sbjct 3899952 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCC 3900011 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || ||||| || ||||||||| Sbjct 3900012 TCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCT 3900071 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || || ||||| || | || || || | ||||| ||| Sbjct 3900072 TGGATCTTAGCCTTAACATTCTCAATTGTGTCCGATGGCTCTACCTCGAGGGTGATGGTC 3900131 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | ||| | ||||| Sbjct 3900132 TTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3900163 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || ||||| || || |||| |||||||||| || || | ||||| Sbjct 3900636 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCC 3900695 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || ||||| || ||||||||| Sbjct 3900696 TCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCT 3900755 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || || ||||| || | || || || | ||||| ||| Sbjct 3900756 TGGATCTTAGCCTTAACATTCTCAATTGTGTCCGATGGCTCTACCTCGAGGGTGATGGTC 3900815 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | ||| | ||||| Sbjct 3900816 TTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3900847 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || ||||| || || |||| |||||||||| || || | ||||| Sbjct 3901092 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCC 3901151 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || ||||| || ||||||||| Sbjct 3901152 TCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCT 3901211 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || || ||||| || | || || || | ||||| ||| Sbjct 3901212 TGGATCTTAGCCTTAACATTCTCAATTGTGTCCGATGGCTCTACCTCGAGGGTGATGGTC 3901271 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | ||| | ||||| Sbjct 3901272 TTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3901303 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || ||||| || || |||| |||||||||| || || | ||||| Sbjct 3901320 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCC 3901379 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || || || || || || || ||||| || Sbjct 3901380 TCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCC 3901439 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| || |||||||| || | || || || | ||||| ||| Sbjct 3901440 TGAATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCTACCTCGAGGGTGATGGTC 3901499 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | ||| | ||||| Sbjct 3901500 TTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3901531 >seq448 Length=23513712 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| || || || | ||||| |||| || ||| | ||||| Sbjct 4228236 AGCACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGCCATCC 4228177 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || ||||| || ||||| || Sbjct 4228176 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCC 4228117 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || | ||||| || || ||||| ||| Sbjct 4228116 TGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTC 4228057 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||||| | ||| | ||||| Sbjct 4228056 TTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4228025 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| | |||||| || || || | || || || | | || | |||||| Sbjct 10409942 AGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCT 10409883 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || || || || ||||| ||||| ||||| Sbjct 10409882 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCC 10409823 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || ||| |||||| || || || | ||| || || | ||||| ||| Sbjct 10409822 TGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTC 10409763 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||| | || || | ||| | ||||| || Sbjct 10409762 TTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 10409728 >seq1870 Length=19524 Score = 127 bits (140), Expect = 5e-24 Identities = 129/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || ||| | || || ||||| ||| |||| ||||| ||| | ||||| Sbjct 1621 CAAATTTATAATGTAATTGTAACTGCACATGCTTTTATTATAATTTTTTTTATAGTTATA 1680 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| || |||||||| | |||||||||||| Sbjct 1681 CCTATTATAATTGGTGGATTTGGAAATTGATTAGTGCCTTTAATATTAGGTGCTCCTGAT 1740 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 || || || ||| | | || |||||||| |||||| | ||||| ||| Sbjct 1741 ATAGCATTCCCACGAATAAATAATATAAGATTTTGACTTCTACCTCCT 1788 Score = 102 bits (112), Expect = 2e-16 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||||||||||||||| ||||||||||| || | |||||||| ||||| || | Sbjct 2193 TTCAGGATGACCAAAAAATCAAAATAAATGTTGGTATAAAATAGGATCTCCTCCTCCCGC 2134 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| |||||||| ||||| ||||||| ||| ||||| Sbjct 2133 TGGGTCAAAAAATGATGTATTTAAATTTCGATCTGTTAA 2095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192502627697780