Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq448 215 4e-51 >seq448 Length=23513712 Score = 215 bits (238), Expect = 4e-51 Identities = 396/589 (67%), Gaps = 6/589 (1%) Strand=Plus/Plus Query 29604 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGT 29663 |||| |||||||||||| || | ||| || || | ||||||| || ||||||| Sbjct 2968709 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGT 2968768 Query 29664 CAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 29723 ||||||||||| | || |||| |||||| ||||| || ||||| | || || || | Sbjct 2968769 TCAGGTAGACGTGTGTGTCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCA 2968828 Query 29724 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCC 29783 | || || ||||||| ||||| || | ||| ||||||||| ||||| || || || | Sbjct 2968829 CATGGGCAATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAAGGGTACGCCCAGGC 2968888 Query 29784 CCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG------TCGCTCACGT 29837 ||||||| | |||||||| ||||||||||| ||||| ||| ||| |||| Sbjct 2968889 CCATGTCTGCGCTTCTCTGGTATAGCTGGCACGAAAGCTCACCGCGCTTCTCGGAGACGT 2968948 Query 29838 AAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCC 29897 ||||||| || | |||||||| || |||||||| | ||| || |||| Sbjct 2968949 AAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGTGGATTCC 2969008 Query 29898 AGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTT 29957 | || ||| ||||||||| | |||| ||||| ||||||||| ||| | | | Sbjct 2969009 AAGCCGACATGATGATGCGACGGTCTGAGGGGTTATTCCTGATGGTGTCGATCACCTGGC 2969068 Query 29958 GCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGA 30017 ||||||| || | |||| | || |||||| ||| Sbjct 2969069 GCAGCTGGTCGATCCCCTTGCCGCTGTAGTCGTCGTCGCAGGTGCCGTACTGCGCCCCGA 2969128 Query 30018 AATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGC 30077 |||||||||| ||||| ||||||||||| ||||| || || | | | | ||| | Sbjct 2969129 AATGCCTCCATTGGAAGCCGTACACCGGCCCCAGATCCCCAACGGCTCGCCCCGTGAACC 2969188 Query 30078 CCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGG 30137 || ||||||||| ||| |||||||| | ||| | |||||||| | || |||| | Sbjct 2969189 CCATCTTGTCCAGAAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCGCCT 2969248 Query 30138 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30186 ||| |||| || || || |||||||||||||||||||| Sbjct 2969249 GCAGCAGCTTGGCGTCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTC 2969297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406153943286820