Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq448 259 4e-64 >seq448 Length=23513712 Score = 259 bits (286), Expect = 4e-64 Identities = 414/591 (70%), Gaps = 10/591 (2%) Strand=Plus/Plus Query 27098 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGAT 27157 |||| |||||||||||| || | ||| || || ||||||||| || ||||| | Sbjct 2968709 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGT 2968768 Query 27158 CCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 27217 |||||||||||| | ||| |||| |||||| ||||| || ||||| | || || || | Sbjct 2968769 TCAGGTAGACGTGTGTGTCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCA 2968828 Query 27218 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 27277 | || || ||||||| ||||| || | ||| ||||||||| |||||||| || || | Sbjct 2968829 CATGGGCAATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAAGGGTACGCCCAGGC 2968888 Query 27278 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT-------ACG 27330 ||||||| | |||||||| ||||| ||||| ||||| || ||||| ||| Sbjct 2968889 CCATGTCTGCGCTTCTCTGGTATAGCTGGCACGAAAGCTCACC-GCGCTTCTCGGAGACG 2968947 Query 27331 TAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTC 27390 |||||||| | | ||||||||| || || ||||| | ||| || ||| Sbjct 2968948 TAAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGTGGATTC 2969007 Query 27391 CAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTT 27450 || || ||| ||||||||| | |||| ||||| ||||||||| ||| | | | Sbjct 2969008 CAAGCCGACATGATGATGCGACGGTCTGAGGGGTTATTCCTGATGGTGTCGATCACCTGG 2969067 Query 27451 TGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TACCCTCATGTCCGTGTACTCTGCTCC 27509 ||||||| || | |||| | || |||||| | | || || | ||||| || || Sbjct 2969068 CGCAGCTGGTCGATCCCCTTGCCGCTGTAGTCGTCGTCGCAGGTGC-CGTACTGCGCCCC 2969126 Query 27510 GAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAA 27569 |||||||||||||||||| ||||||||||| ||||| || || | | | | ||| Sbjct 2969127 GAAATGCCTCCATTGGAAGCCGTACACCGGCCCCAGATCCCCAACGGCTCGCCCCGTGAA 2969186 Query 27570 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 27629 ||| ||||||||| ||| |||||||| | ||| | |||||||| | || |||| | Sbjct 2969187 CCCCATCTTGTCCAGAAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCGC 2969246 Query 27630 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 27680 ||| |||| || || || |||||||||||||||||||| Sbjct 2969247 CTGCAGCAGCTTGGCGTCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTC 2969297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369498778699970