Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq448 410 2e-109 >seq448 Length=23513712 Score = 410 bits (454), Expect = 2e-109 Identities = 1207/1853 (65%), Gaps = 18/1853 (1%) Strand=Plus/Plus Query 76770 TTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATA 76829 ||||| | || || |||||||| | | | || || || || || ||||||||||| Sbjct 10325241 TTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATT 10325300 Query 76830 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTA 76889 || ||||| ||||| |||| || ||||| ||| ||||| || ||| | Sbjct 10325301 CCGGTTTTGAGACCAGCTTTCCAGGAATAAAAATGTATGGAGGTCAGCTTTCCATAGTTT 10325360 Query 76890 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 76949 || ||||| | ||| || || | ||||||||| ||||| ||||| || || | ||| || Sbjct 10325361 GGCTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCG 10325420 Query 76950 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT- 77008 |||||||| || ||| ||| | |||||||| | || ||| | | | | | Sbjct 10325421 GCCATTTTAATCGTGGACTTGACCGAGATTTCCCACACCGTCTTGTACA---GATCGCGC 10325477 Query 77009 ATCATCTGG---AAGGTTTGTAT--TTTGAATGGAACCACCATCTGATATAATTGTATTC 77063 | | || || | ||| | || |||| || || || | ||||| || ||| Sbjct 10325478 ACCTTCGGGGGTATGGTCTCAATGTTTTGGATCGATCCTCTGCTGGATATGATCTGGTTC 10325537 Query 77064 TTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACT 77123 || || || || | |||||| | | ||| |||| | | | | |||| | || || Sbjct 10325538 TTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGACC 10325597 Query 77124 ATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACA 77183 | || ||||| || |||| |||| || ||||| || || |||| || || || | Sbjct 10325598 ACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTTGTGGTGTAGGGCTCGAAG 10325657 Query 77184 GATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAA 77243 |||||||| || |||| || ||||| ||||| || || ||||| || || || | | | Sbjct 10325658 GATTCATTATTGCCCATTATCTGAGCTGTAGATGCCGTGGGCATGGGAGCAACAAGCAGA 10325717 Query 77244 CTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCT 77303 || | || ||| || | || || || || | | | ||| ||||| || | Sbjct 10325718 GAGTTCCGGACACCGTGCATCCTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGTTC 10325777 Query 77304 GAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTA 77363 | || || ||||| | |||||||| | |||||| || || | || | Sbjct 10325778 GTTGGCACCTTGTCCCACATGTCGTATTGCAAAATTCCCTTGCTTACCGGGCTGCCCTCG 10325837 Query 77364 TATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAA 77423 || ||||| || || ||||| || | || ||||| || || |||||||| || || || Sbjct 10325838 TAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAG 10325897 Query 77424 TAAATTGTTTCGAAAATCTTCTTATT---GAGATCTTGTGCTTCAATACTATCAAACGGA 77480 ||||| |||||||| |||| || ||| |||| | | |||| || || |||| Sbjct 10325898 TAAATCGTTTCGAATATCTGCTGATTCAAGAGACCGGCTTCTTCG---CTTTCGTACGGG 10325954 Query 77481 TAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGT 77540 || | | ||||| || ||||| || |||||||||| ||||| || | || | || Sbjct 10325955 AAACGCATGAGAATCAAAGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGC 10326014 Query 77541 CTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTG 77600 ||| |||||| | | || ||||| | ||||||||| || || || || || || || Sbjct 10326015 CTCAAATTGGATTTCCTTGCCTCTGGCAGAGGATAATAGTTGATATCAATTATCTTGTTT 10326074 Query 77601 AGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA--TCTTC-CA 77657 |||||| | ||||| || || ||||| || || |||||| | ||||| | Sbjct 10326075 AGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAATCATACGTCTTCTCC 10326134 Query 77658 TCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCG 77717 | ||||||||||| | || || || || | || || ||||||| ||||| | Sbjct 10326135 GGCGTTACAAACATGTTGAGGGCAATGGAGGCCAAGTTGCAGACTGCTATCTCATCCGGT 10326194 Query 77718 TTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGT 77777 || |||| || || || ||||| | || || || ||||| ||||||| ||| || Sbjct 10326195 GCGGAGTATTCTACGATTTCCGTACACAAGTTGCTGCACTTGATTGTGCCCACATTCTGC 10326254 Query 77778 TGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATC 77837 ||||||||||| | ||||| | |||||| | || || ||||| | ||||| || | Sbjct 10326255 TGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAACAGCATGTACGGATTTCCGGTCTCCACT 10326314 Query 77838 TGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTC 77897 || | || || || | ||| | | | ||| || | | | ||| || | | Sbjct 10326315 TGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCCCGACCC 10326374 Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 ||| || |||| || ||| ||| |||||||| ||||| || || | | ||| Sbjct 10326375 TCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACGTCGTGGAGACCA 10326434 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || || | | |||||||| | ||||| ||||| | ||| || |||||||| ||| Sbjct 10326435 GGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAG 10326494 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTA 78077 ||||| |||||||| || || ||| ||||| || | | || ||||| || ||||| Sbjct 10326495 AGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCTGTG 10326554 Query 78078 TTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCC 78137 ||||| || || || || ||||| | | ||| || ||||| ||||| || || || || Sbjct 10326555 TTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGGTAAATGGCA 10326614 Query 78138 ATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACT 78197 | | || || || || ||||||||||| | ||| | || ||||| |||| Sbjct 10326615 AAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAAACC 10326674 Query 78198 CTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTT 78257 |||| |||||||| | || || || ||||||||||| || |||| | | || || Sbjct 10326675 CTCAGCATTGGAACCAACCCATTCGAAGTTCCATTTGTGCCGCAAATCGATGTGCCCTTT 10326734 Query 78258 GCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAA 78317 || ||||| | | | || || || || || ||| || || | ||||| Sbjct 10326735 GCACGAATGCAGTGTACGTTAAGTCCAATGCCACCGGCGGACTTGGAGATCATGGCGCAC 10326794 Query 78318 CGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAG 78377 | | || | | | | || ||||| || ||| | ||||| | ||||| ||||| Sbjct 10326795 TGCTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACAC 10326854 Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 |||| || | | || | || ||| | ||| || ||||||||||| || Sbjct 10326855 GACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGCGTGAAG 10326914 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 | || || || ||||| || ||||| | || | || || ||| | ||| ||| Sbjct 10326915 TAGCGCTCCGATAGAAGATTATAAGTTTCCACGGCCGCATCGATATCCTCTCCATGGATT 10326974 Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTC 78557 || | ||| || ||||||| ||||||||| |||| || | |||| ||| |||| Sbjct 10326975 CCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTCTTTTG 10327034 Query 78558 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 78610 | || || || |||| || || || ||||||||||| || |||||| Sbjct 10327035 AGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATAGCCAAAGTC 10327087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694652562116800