Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq448 390 2e-103 >seq448 Length=23513712 Score = 390 bits (432), Expect = 2e-103 Identities = 1207/1855 (65%), Gaps = 22/1855 (1%) Strand=Plus/Plus Query 75365 TTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATA 75424 ||||| | || ||||||||||||| | | ||||| || || || ||||||||||| Sbjct 10325241 TTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATT 10325300 Query 75425 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTC 75484 || ||||| ||||| |||| || ||||| ||| || || || ||| | Sbjct 10325301 CCGGTTTTGAGACCAGCTTTCCAGGAATAAAAATGTATGGAGGTCAGCTTTCCATAGTTT 10325360 Query 75485 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 75544 || ||||| | ||| || || | ||||||||| ||||| ||||| || || | ||| || Sbjct 10325361 GGCTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCG 10325420 Query 75545 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT- 75603 |||||||| || ||| ||| | |||||||| | || ||| | | | | | Sbjct 10325421 GCCATTTTAATCGTGGACTTGACCGAGATTTCCCACACCGTCTTGTACA---GATCGCGC 10325477 Query 75604 ATCATCTGG---AAGATTTGTAT--TTTGAATGGATCCGCCATCAGATATAATTGTATTC 75658 | | || || | | | | || |||| || ||||| | ||||| || ||| Sbjct 10325478 ACCTTCGGGGGTATGGTCTCAATGTTTTGGATCGATCCTCTGCTGGATATGATCTGGTTC 10325537 Query 75659 TTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACA 75718 || || || || | |||||| | |||||||| | | | | |||| | || || Sbjct 10325538 TTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGACC 10325597 Query 75719 ATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACA 75778 | || ||||| || |||| |||| || ||||| || || |||| || || || | Sbjct 10325598 ACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTTGTGGTGTAGGGCTCGAAG 10325657 Query 75779 GATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAA 75838 |||||||| || |||| || ||||| || || || || ||||| || || || | | | Sbjct 10325658 GATTCATTATTGCCCATTATCTGAGCTGTAGATGCCGTGGGCATGGGAGCAACAAGCAGA 10325717 Query 75839 CTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCT 75898 || | || ||| || | || || || || | | | ||| ||||| || | Sbjct 10325718 GAGTTCCGGACACCGTGCATCCTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGTTC 10325777 Query 75899 GATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTA 75958 | ||| || ||||| | |||||||| | |||||| ||||| | || | Sbjct 10325778 GTTGGCACCTTGTCCCACATGTCGTATTGCAAAATTCCCTTGCTTACCGGGCTGCCCTCG 10325837 Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAA 76018 || |||||||| | || || | | || |||||||| || || || || || || || Sbjct 10325838 TAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAG 10325897 Query 76019 TAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 ||||| |||||||| |||| || ||| |||| | ||||| || || | || | Sbjct 10325898 TAAATCGTTTCGAATATCTGCTGATTCAAGAGACCG-GCTTCTTCGCTTTCGTACGGGAA 10325956 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCT 76137 | | | ||||| || ||||| || | |||||||| ||||| || | || | || || Sbjct 10325957 ACGCATGAGAATCAAAGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGCCT 10326016 Query 76138 CTTATTGGAAATTTCA--GCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 | |||||| |||| || ||||| | ||| ||||| || ||||| || || || || Sbjct 10326017 CAAATTGGA--TTTCCTTGCCTCTGGCAGAGGATAATAGTTGATATCAATTATCTTGTTT 10326074 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA----TTTTCC 76251 |||||| || ||||| || || ||||| || || |||||| | || ||| Sbjct 10326075 AGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAATCATACGTCTTCTCC 10326134 Query 76252 ATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGC 76311 | | |||||||| || || || || || || | || || || |||| ||||| | Sbjct 10326135 GGCGTT-ACAAACATGTTGAGGGCAATGGAGGCCAAGTTGCAGACTGCTATCTCATCCGG 10326193 Query 76312 ATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTG 76371 || |||| || || ||||| || | || || |||||||| || || | ||| || Sbjct 10326194 TGCGGAGTATTCTACGATTTCCGTACACAAGTTGCTGCACTTGATTGTGCCCACATTCTG 10326253 Query 76372 TTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAAT 76431 ||||||||||| |||| || | |||||| | || | ||||| |||| || || | Sbjct 10326254 CTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAACAGCATGTACGGATTTCCGGTCTCCAC 10326313 Query 76432 CTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTT 76491 || | || || || | ||| | | | ||| || | | ||| || Sbjct 10326314 TTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCCCGACC 10326373 Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||| || |||| || | | ||| |||||||| ||||| || || | | ||| Sbjct 10326374 CTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACGTCGTGGAGACC 10326433 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 |||||| | | || ||||| | ||||| ||||| | ||| || |||||||| || Sbjct 10326434 AGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAA 10326493 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 |||||| |||||||| || || ||| ||||| || | | | ||||| || ||||| Sbjct 10326494 GAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCTGT 10326553 Query 76672 ATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 ||||| || || || |||||||| | | ||| || ||||| ||||| || || || || Sbjct 10326554 GTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGGTAAATGGC 10326613 Query 76732 CATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAAC 76791 | |||| || || || ||||||||||| | ||| | || ||||| |||| Sbjct 10326614 AAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAAAC 10326673 Query 76792 TCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACA 76851 |||| |||||||| | || || || || |||||||| || |||| | | || Sbjct 10326674 CCTCAGCATTGGAACCAACCCATTCGAAGTTCCATTTGTGCCGCAAATCGATGTGCCCTT 10326733 Query 76852 TGCACGAATATTACTAATAGAT-AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 76910 ||||||||| | | | | || || || || || || || ||||| | || | Sbjct 10326734 TGCACGAAT-GCAGTGTACGTTAAGTCCAATGCCACCGGCGGACTTGGAGATCATGGCGC 10326792 Query 76911 AGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAAC 76970 | | | || | | | |||||||| || || | ||||| | ||||| |||| Sbjct 10326793 ACTGCTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAAC 10326852 Query 76971 AGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGA 77030 | |||| || | | || | || ||||| ||| || |||||||| |||| Sbjct 10326853 ACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGCGTGA 10326912 Query 77031 ACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAA 77090 | | || || || ||||| || ||||| | | || || |||||| | ||| | Sbjct 10326913 AGTAGCGCTCCGATAGAAGATTATAAGTTTCCACGGCCGCATCGATATCCTCTCCATGGA 10326972 Query 77091 TTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTT 77150 |||| | || || ||||||| ||||||||| ||||| ||| | |||| ||| ||| Sbjct 10326973 TTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTCTTT 10327032 Query 77151 TCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 | | || || || |||| || || || ||||||||||| || |||||| Sbjct 10327033 TGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATAGCCAAAGTC 10327087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712917735158400