Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq448 134 1e-26 seq1 125 7e-24 seq450 116 3e-21 >seq448 Length=23513712 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| ||||| ||| ||||||||||||||| |||||||| Sbjct 4228251 CCACCACGCAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 4228192 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||||||||| ||||| ||||| || || | |||| Sbjct 4228191 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 4228132 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||| ||| ||| || ||| | | | ||||| | ||||||| Sbjct 4228131 ATGCCCTCCTTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACC 4228072 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || || || ||||| |||||||| Sbjct 4228071 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4228025 Score = 125 bits (138), Expect = 7e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| |||| ||| ||||||||||||||||||||| ||| Sbjct 10409957 CCACCACGCAGGCGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 10409898 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| ||||| ||||| || || | ||| Sbjct 10409897 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 10409838 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||||| ||| | || |||| || | | ||| || || || || Sbjct 10409837 ATTCCTTCTTTGTCC-TGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGAC 10409779 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||||| || ||||| ||||| |||||||| || Sbjct 10409778 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 10409728 >seq1 Length=23542271 Score = 125 bits (138), Expect = 7e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || ||||| | |||| || || || ||||||||| ||||| ||||||| Sbjct 6277152 CGCCACCACGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 6277211 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | || ||||| |||| ||||||||||| |||||||| |||| ||||| || || | || Sbjct 6277212 ACAGAGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGG 6277271 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCC 41812 | | | |||||||||| || | || || | |||| | | || ||| | ||| Sbjct 6277272 GGATTCCCTCCTTGTCC-TGGATCTTGGCCTTAACGTTCTCAATGGTATCGGATGGCTCG 6277330 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| || || || || || || || ||||| ||||| ||||||||| Sbjct 6277331 ACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 6277381 >seq450 Length=28110227 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||||||||| ||||| || ||||| Sbjct 3899709 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3899768 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||||||||| ||||| ||||| || || | |||| Sbjct 3899769 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 3899828 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| || ||| | | | ||||| | ||| ||| Sbjct 3899829 ATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTACC 3899888 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || |||| ||||| ||||| |||||||| Sbjct 3899889 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3899935 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||||||||| ||||| || ||||| Sbjct 3899937 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3899996 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||||||||| ||||| ||||| || || | |||| Sbjct 3899997 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 3900056 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| || ||| | | | ||||| | ||| ||| Sbjct 3900057 ATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCCGATGGCTCTACC 3900116 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || |||| ||||| ||||| |||||||| Sbjct 3900117 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3900163 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||||||||| ||||| || ||||| Sbjct 3900165 CCACCACGAAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3900224 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||||||||| ||||| ||||| || || | |||| Sbjct 3900225 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 3900284 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| || ||| | | | ||||| | ||| ||| Sbjct 3900285 ATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTACC 3900344 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || |||| ||||| ||||| |||||||| Sbjct 3900345 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3900391 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||||||||| ||||| || ||||| Sbjct 3900393 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3900452 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||||||||| ||||| ||||| || || | ||| Sbjct 3900453 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 3900512 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || | ||||| | | ||||| | ||| || Sbjct 3900513 ATTCCCTCCTTATCC-TGAATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCTAC 3900571 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| ||||| ||||| |||||||| Sbjct 3900572 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3900619 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||||||||| ||||| || ||||| Sbjct 3900621 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3900680 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||||||||| ||||| ||||| || || | |||| Sbjct 3900681 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 3900740 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| || ||| | | | ||||| | ||| ||| Sbjct 3900741 ATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCCGATGGCTCTACC 3900800 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || |||| ||||| ||||| |||||||| Sbjct 3900801 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3900847 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||||||||||||||| || ||||| Sbjct 3900849 CCACCACGAAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 3900908 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| ||||| ||||| || || | |||| Sbjct 3900909 AGGGTGCGTCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGA 3900968 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| || ||| | | | ||||| | ||| ||| Sbjct 3900969 ATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTACC 3901028 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || |||| ||||| ||||| |||||||| Sbjct 3901029 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3901075 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||||||||| ||||| || ||||| Sbjct 3901077 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3901136 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||||||||| ||||| ||||| || || | |||| Sbjct 3901137 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 3901196 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| || ||| | | | ||||| | ||| ||| Sbjct 3901197 ATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCCGATGGCTCTACC 3901256 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || |||| ||||| ||||| |||||||| Sbjct 3901257 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3901303 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || |||||||| ||||| || ||||| Sbjct 3899481 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGAC 3899540 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||||||||| ||||| ||||| || || | |||| Sbjct 3899541 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 3899600 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| || ||| | | | ||||| | ||| ||| Sbjct 3899601 ATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTACC 3899660 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || |||| ||||| ||||| |||||||| Sbjct 3899661 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3899707 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||||||||||||||| || ||||| Sbjct 3901533 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 3901592 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || |||||||||||||| ||||| ||||| || || | |||| Sbjct 3901593 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 3901652 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||| ||| || ||| | | | ||||| | ||| ||| Sbjct 3901653 ATTCCTTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTACC 3901712 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | || || || || || |||| ||||| || || |||||||| || Sbjct 3901713 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAGATCTGCATTTT 3901762 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||||||||| ||||| || ||||| Sbjct 3901305 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3901364 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| ||||| ||||| || || | ||| Sbjct 3901365 AGGGTGCGTCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGG 3901424 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || | ||||| | | ||||| | ||| || Sbjct 3901425 ATTCCCTCCTTATCC-TGAATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCTAC 3901483 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| ||||| ||||| |||||||| Sbjct 3901484 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3901531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462293193644000