Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq4 129 6e-25
>seq4
Length=20862834
Score = 129 bits (142), Expect = 6e-25
Identities = 360/544 (66%), Gaps = 10/544 (2%)
Strand=Plus/Plus
Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005
||||| | | |||| || || || ||||| || | || ||||| | | ||| ||
Sbjct 15862721 AGATGGTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGC 15862780
Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065
||||| || || |||| |||||||| || || ||||| | |||||| |||| |||
Sbjct 15862781 TCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCA 15862840
Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125
|| || |||||| || || || |||| ||||| || || | || ||||| |
Sbjct 15862841 AAGCTGCCGCTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAG 15862900
Query 17126 GTCGCGTCTTTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC 17184
| || ||| | || ||||| | |||| || || || |||||| || |
Sbjct 15862901 TTGGCCGATTTCG-AGGATATCCAGGACATGGCCCAGTCCGCCTTGCGCTTTA--CAGCC 15862957
Query 17185 --CATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTA 17242
||| || || || || || || || | || ||||| | || ||| || ||
Sbjct 15862958 GGCATGGTCTCAATAGCATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTG 15863017
Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302
|| ||||| | ||||||||| |||||||| | ||||||||||||||||| || |||||
Sbjct 15863018 TCAATGAGCACGCTGTACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAG 15863077
Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCC--ACGTAGAATCGTTCCGCTAGATTTTCGT 17360
||||| || || |||| || || || ||| || || || || || | ||||| ||||
Sbjct 15863078 AAGCAACGTGCCTCCGTGATCTGCACCTCCTGAC-TA-AAGCGCTCGACCAGATTCTCGT 15863135
Query 17361 TCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGT 17420
| || |||||||| || ||||| || || | | ||| || || || ||||
Sbjct 15863136 TAACAATGCCGTCCGAGGCAGCGAAGAAGGCTAGCACATGGGAGATAAAGTAGCGCTCGT 15863195
Query 17421 CCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCC 17480
|| ||| | ||||||| | || || |||| |||||| ||||| |||||
Sbjct 15863196 TGTCAGTGAGACGGGCCCAGTCCGTCGCGTCCTTCGATAGATCCACCTCTTCCACGGTCC 15863255
Query 17481 AAAA 17484
| ||
Sbjct 15863256 AGAA 15863259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517545561184080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |