Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4 129 6e-25 >seq4 Length=20862834 Score = 129 bits (142), Expect = 6e-25 Identities = 360/544 (66%), Gaps = 10/544 (2%) Strand=Plus/Plus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 ||||| | | |||| || || || ||||| || | || ||||| | | ||| || Sbjct 15862721 AGATGGTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGC 15862780 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065 ||||| || || |||| |||||||| || || ||||| | |||||| |||| ||| Sbjct 15862781 TCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCA 15862840 Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125 || || |||||| || || || |||| ||||| || || | || ||||| | Sbjct 15862841 AAGCTGCCGCTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAG 15862900 Query 17126 GTCGCGTCTTTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC 17184 | || ||| | || ||||| | |||| || || || |||||| || | Sbjct 15862901 TTGGCCGATTTCG-AGGATATCCAGGACATGGCCCAGTCCGCCTTGCGCTTTA--CAGCC 15862957 Query 17185 --CATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTA 17242 ||| || || || || || || || | || ||||| | || ||| || || Sbjct 15862958 GGCATGGTCTCAATAGCATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTG 15863017 Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302 || ||||| | ||||||||| |||||||| | ||||||||||||||||| || ||||| Sbjct 15863018 TCAATGAGCACGCTGTACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAG 15863077 Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCC--ACGTAGAATCGTTCCGCTAGATTTTCGT 17360 ||||| || || |||| || || || ||| || || || || || | ||||| |||| Sbjct 15863078 AAGCAACGTGCCTCCGTGATCTGCACCTCCTGAC-TA-AAGCGCTCGACCAGATTCTCGT 15863135 Query 17361 TCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGT 17420 | || |||||||| || ||||| || || | | ||| || || || |||| Sbjct 15863136 TAACAATGCCGTCCGAGGCAGCGAAGAAGGCTAGCACATGGGAGATAAAGTAGCGCTCGT 15863195 Query 17421 CCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCC 17480 || ||| | ||||||| | || || |||| |||||| ||||| ||||| Sbjct 15863196 TGTCAGTGAGACGGGCCCAGTCCGTCGCGTCCTTCGATAGATCCACCTCTTCCACGGTCC 15863255 Query 17481 AAAA 17484 | || Sbjct 15863256 AGAA 15863259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545561184080