Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4 111 2e-19 >seq4 Length=20862834 Score = 111 bits (122), Expect = 2e-19 Identities = 295/448 (66%), Gaps = 2/448 (0%) Strand=Plus/Plus Query 16183 TAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAG 16242 ||| || | | |||| || ||| |||||||| || || |||||||| | | ||| || Sbjct 15862720 TAGATGGTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAG 15862779 Query 16243 TTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGC 16302 |||||||| || || | || ||||| || || ||||| | ||| || |||| || Sbjct 15862780 CTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGC 15862839 Query 16303 AAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTA 16362 ||| || |||||| || || || || | ||||| || || | || || || | Sbjct 15862840 AAAGCTGCCGCTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAA 15862899 Query 16363 CGTAGCATCTTTATTACGA-ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAAT 16421 | || ||| | || ||||| | |||| || || || | |||| | Sbjct 15862900 GTTGGCCGATTTCG-AGGATATCCAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCG 15862958 Query 16422 CCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTAT 16481 ||| || || || || || ||||| | || ||||| || ||| || || | Sbjct 15862959 GCATGGTCTCAATAGCATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGT 15863018 Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541 |||| || | |||||||| || ||||| | ||||| ||||||||||| || || |||| Sbjct 15863019 CAATGAGCACGCTGTACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGA 15863078 Query 16542 AGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCA 16601 |||| || ||||||| || || || ||| ||| || || |||| ||||| || | Sbjct 15863079 AGCAACGTGCCTCCGTGATCTGCACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAA 15863138 Query 16602 CGATACCGTCACTTGCAGCAAAAAACGC 16629 | || ||||| ||||| || || || Sbjct 15863139 CAATGCCGTCCGAGGCAGCGAAGAAGGC 15863166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414361643920