Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5 551 6e-152 seq4 141 1e-28 >seq5 Length=28826359 Score = 551 bits (610), Expect = 6e-152 Identities = 1261/1879 (67%), Gaps = 27/1879 (1%) Strand=Plus/Minus Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857 |||||| | || ||||| || | || || ||||| || |||| |||||||||||| Sbjct 15308262 CTTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCC 15308203 Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGG 52917 |||||||| || |||| | ||||||| || ||| | ||| || | || Sbjct 15308202 GGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGG 15308143 Query 52918 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 52977 ||||||| || | ||| | || ||||||||||| || || || || || || ||||| Sbjct 15308142 CTCTGCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGC 15308083 Query 52978 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 53036 |||||| || | | ||| || ||||||||| | ||||||||||| |||| || | Sbjct 15308082 CATTTTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCG-AACCT 15308024 Query 53037 CTTCTGGAAG-GTTTGTAT-TCT-GAATAGATCCACCATCTACCA-TAATCCTATTCTTG 53092 || |||| |||| || ||| |||| || || || || | | || |||| || Sbjct 15308023 TTTGGGGAATAGTTTCAATATCTTGAATGGAGCC-CCTGCTGGAAATTATTTTATTTTTC 15307965 Query 53093 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 53152 |||||||||| |||||| | ||| |||||| | || | | ||| |||| || ||| Sbjct 15307964 ATCTCATCATCCCATAAGTCCAACTCTGTTAAATCCCTCAATAAATGATGATTGACCACT 15307905 Query 53153 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 53212 |||||||| ||||| ||||||| | || |||||||| ||||||| ||||| | || Sbjct 15307904 TGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGAT 15307845 Query 53213 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 53272 || ||||| |||| |||||| ||||| ||||| || ||||| || || || || || | Sbjct 15307844 TCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAA 15307785 Query 53273 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 53332 || |||| |||| || | || | ||||| || || ||||| ||| || | || Sbjct 15307784 TTCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCCCATAGGTTCGTT 15307725 Query 53333 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 53391 || ||||||||| || || || | | || |||| |||| Sbjct 15307724 GGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACT-TCCTTCATA 15307666 Query 53392 TGTATCGTATGGTCCT--TCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 || || ||||| || | ||| ||| ||||||||||| || |||| || || || Sbjct 15307665 GGTTTCATATGGACCAAATGCTTG--AGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAA 15307608 Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 ||||| ||||| || || | | |||| | ||||| ||| ||| | ||| || Sbjct 15307607 TAAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAA 15307548 Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569 | | ||| || ||||| |||| ||||||| ||| |||||||| || | ||| || Sbjct 15307547 CGCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTT 15307488 Query 53570 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGG 53629 ||| || | | |||||||| | ||| ||||| || || ||||||||||| || || Sbjct 15307487 AAATTGGACTTCTTGGCTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTTGTTAAGA 15307428 Query 53630 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TTGTCCATCT 53686 ||| || ||| |||| || || || | ||| |||||| | || | | || Sbjct 15307427 TTTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTTCTGCT 15307368 Query 53687 ATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 53746 |||| |||||||||| ||| || || || | ||| || || || | ||||| || | Sbjct 15307367 GTTACGAACATGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAGGTGCT 15307308 Query 53747 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 53806 | || | | || || || || | |||||| || || || || || | |||||||||| Sbjct 15307307 GAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGA 15307248 Query 53807 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGG 53866 || |||||| | || || | ||||||| |||| ||| |||| |||||||||| | || Sbjct 15307247 TTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCACTTGC 15307188 Query 53867 GATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATA-GATTTGTATCTCTTTTC 53925 ||||||||||| || ||| | | | || | | | | |||| | | || || | Sbjct 15307187 GATTCTATAATGGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTCGCACGTCCTT-C 15307129 Query 53926 TCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGG 53985 | || ||| ||| | | |||||| | || |||||||||| | | ||||| Sbjct 15307128 TTGCTCATATTTGACATAGAGTTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAGG 15307069 Query 53986 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 54045 ||||| || ||||||||||| ||||| | | | ||| || |||||||| || || Sbjct 15307068 ACATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCTCAACACGTTTCATGAAAAG 15307009 Query 54046 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 54105 |||||||||||| | ||| ||| ||||| | | || | ||| || ||||| || || Sbjct 15307008 ATCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCTCGGTTTTCTTCTTTTCCAGTGTT 15306949 Query 54106 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCAT 54165 |||| || || | ||| | | || ||| |||||||| || || || || || | | Sbjct 15306948 TCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAA 15306889 Query 54166 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 54225 | ||||| | ||| ||||||||||| | |||| ||| |||||| ||||||| Sbjct 15306888 GGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGAGCCACATTATTAAAAACTCT 15306829 Query 54226 CAACATTGGAA-TAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 54284 |||||||||| |||| ||||| || | ||| || || || | || | | || | | Sbjct 15306828 TAACATTGGAACTAAT-CCATTCGACGTACCGTTCGTTCCACATATTGAAGTGCCTTTAG 15306770 Query 54285 CACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATC 54344 ||||||| | | | ||| || || || ||||| ||| || || | ||| ||| Sbjct 15306769 CACGAAT-GCAATGAACATTAGTCCGATTCCACCTGCTGATTTGGAAATCAGTGCACATT 15306711 Query 54345 GTTTTAACGTATCATAGATGCCCTCTATACTATC---ATCCATCATGTTAAGTAGAAAAC 54401 ||| | | | | | || || || || ||| || ||| ||| || ||||||| Sbjct 15306710 GTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCAT--TGTCAA-AAGAAAAC 15306654 Query 54402 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 54461 | |||| ||| | ||| | || | ||| ||| | || || || || ||||||| Sbjct 15306653 ACGAGGACAATTGAGGTCGATTTGTAGCAGCAGCAAAAAGCGTTGGCGAGGCATGCGTAA 15306594 Query 54462 ACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAA 54521 | || |||||| ||||| ||||| || || | || | || ||||| | ||||| Sbjct 15306593 AGTATCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGCATCAATATCGTCTCCATGAA 15306534 Query 54522 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 54581 | || | ||||| ||||| | |||||| || || | ||| | || || ||||| | Sbjct 15306533 TACCAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCTGCAATTTTCCCATTTATCT 15306474 Query 54582 TCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 54641 | || | ||||| || | || ||||| ||||||||||| || ||| ||||| | Sbjct 15306473 TAAGTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCAAAATCTCGGT 15306414 Query 54642 CGTAAATAATAACTGAGTT 54660 | ||||||||| | ||||| Sbjct 15306413 CATAAATAATAGCAGAGTT 15306395 >seq4 Length=20862834 Score = 141 bits (156), Expect = 1e-28 Identities = 352/532 (66%), Gaps = 3/532 (1%) Strand=Plus/Plus Query 24138 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 24197 || || |||||||| ||||| ||||| | || | |||||||| || || || ||| Sbjct 15862742 GCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCG 15862801 Query 24198 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 24257 ||||| || |||||||| || |||||||| || || ||||| || |||||| ||| Sbjct 15862802 GGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTAAAGAAGATT 15862861 Query 24258 CCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG-CGCTGTCATG--TATC 24314 ||||| || |||||||||||||||| | || || | || || | || | |||| Sbjct 15862862 CCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 15862921 Query 24315 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 24374 || ||||| || ||||| |||||| ||||| ||||| |||||||| || Sbjct 15862922 CAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAAC 15862981 Query 24375 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 24434 | |||| || | || | || || ||||| | | || ||||| || Sbjct 15862982 AAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 15863041 Query 24435 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 24494 || || | || || ||||| || || || |||||||| || | ||||| || ||||| Sbjct 15863042 GAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCCGTGATCTGC 15863101 Query 24495 ACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 24554 || || || ||| || || | | ||| || || || || ||||| ||| || || Sbjct 15863102 ACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAG 15863161 Query 24555 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 24614 || || | ||||| ||||| || |||| || || ||| || | Sbjct 15863162 AAGGCTAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGTC 15863221 Query 24615 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 || || |||| |||||| |||||||| ||||| || || ||||| |||| Sbjct 15863222 GCGTCCTTCGATAGATCCACCTCTTCCACGGTCCAGAAGGAGGCCTCCGCCT 15863273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721555470880