Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq5 174 2e-38 >seq5 Length=28826359 Score = 174 bits (192), Expect = 2e-38 Identities = 241/338 (71%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 145606 AAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGAAAGGGCCGGGGGCTC 145665 || || || |||| ||| ||| | | | ||| | ||| | ||||| ||||| || | Sbjct 2480112 AAATCTTCAATGTTCTCAACCTGTCGCTTGATGTTCAGCTTTGGAAACGGCCGCGGCTTG 2480171 Query 145666 CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGG 145725 | ||||||| |||||| || || || ||||| || || || || ||||| |||| | Sbjct 2480172 CGTTTCAGCTGCTCCTTCAGTGGATCAACATGGTTAAGATACACATGAGCGTCGCCCATG 2480231 Query 145726 ACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGG 145785 |||||| ||||| || | || | ||| || | ||||| | |||||||||||||||| Sbjct 2480232 GTGTGGATAAAGTCGCCCGTCTTCAAGCCAGTTACATGGGCTATCATGTAGGTCAGCAGG 2480291 Query 145786 GAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGC 145845 | |||| || |||||||| ||||| || || |||||||| | |||||| |||||| Sbjct 2480292 GCGTAGGATGCGATGTTGAATGGCACGCCAAGGCCCATGTCGGCGCTGCGCTGATACAGC 2480351 Query 145846 TGGCAGGAGAGCTCCCCGC------CCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGC 145899 |||||||| ||||| |||| || ||||||||||| ||| ||||||||| Sbjct 2480352 TGGCAGGACAGCTCTCCGCGGGTCTGCGAGACGTAGAACTGTGCCAGACAATGGCAGGGC 2480411 Query 145900 GGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGC 145937 || || ||||| ||| | |||| || ||||| || Sbjct 2480412 GGGAGTGCCATTTTGGGTATGTCCAGGGGATTCCATGC 2480449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076755744240