Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2 138 1e-27 seq5 125 6e-24 seq1 105 6e-18 >seq2 Length=30136903 Score = 138 bits (152), Expect = 1e-27 Identities = 241/343 (70%), Gaps = 6/343 (2%) Strand=Plus/Minus Query 23617 CCAATGATGCCGCAGCCCAGCCGGCCGCCAGAATTGCCCGTGGTCTTGCTGAGCGGGTGC 23676 ||||||| |||||||| | ||| |||| | |||||| ||||||||||| ||| ||| Sbjct 15750342 CCAATGACACCGCAGCCAATACGGGCGCCGGCATTGCCGGTGGTCTTGCTTAGCTCGTGA 15750283 Query 23677 TCGCCGAGGCCCAGGTCATCGCGGTCCGTGTGCACGACCAGGCTGCGGCCCAATATACTC 23736 | || ||||| |||||| ||| | ||| ||||||| | |||| || | || || Sbjct 15750282 CCACCCTTGCCCAAGTCATCAGCGTCGGCGTGGACGACCACGGTGCGTCCTATGATGCTG 15750223 Query 23737 AACGGC-CCAAACAGGGTTATCACGTTGTCGCTCATGTGTATGGCCGTGAGTGCGGTGCA 23795 |||| || ||||| || ||| |||| | ||| | ||||||| | || || || Sbjct 15750222 T-CGGCACCGAACAGCGTGATCTTCGAGTCGGTGATGCTGACGGCCGTGGG-GCTGT-CA 15750166 Query 23796 GCCCGCAGAGCGCACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCC 23855 || || | | | |||||||| |||||| | ||| || | | | || ||| || || Sbjct 15750165 -CCGGCCGCCTGGATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCATCGGTGGGGGCACC 15750107 Query 23856 GTGTCTCTGGCGGGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTC 23915 ||| || | |||||||||||| ||| | ||| ||||||||||| || |||| Sbjct 15750106 GTGCTCCTTGTTCCGGGGGTTAAAGTGGGGGCCGGACGACATGCAGCCGTTGGTGTTGTC 15750047 Query 23916 GCCGAATTCGTGCACGTGAAAACCGTGCAGCCCGCGAGGCAAG 23958 ||||| |||||||| || || |||||||| || | |||||| Sbjct 15750046 CCCGAACTCGTGCACATGGAATCCGTGCAGTCC-CTTGGCAAG 15750005 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||| | ||| |||||||| || ||||| ||||||| || || || | ||| Sbjct 19092567 AGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCC 19092626 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| || | || || | ||||||||| ||| | || |||||||| Sbjct 19092627 TCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCC 19092686 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || || |||||| |||| ||| ||||| Sbjct 19092687 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTT 19092746 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAAT 21182 || || || || ||||| ||||| || ||||||||| || Sbjct 19092747 TTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTGTAT 19092785 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | ||||||| ||| | ||| |||||||| || ||||| ||||||| Sbjct 19092323 TCCGCCACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 19092382 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || || | ||||||||||| ||||| || | || || | ||||||||| ||| Sbjct 19092383 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGG 19092442 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | || |||||||| |||||| ||||| | | | || || |||||| Sbjct 19092443 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCAC 19092502 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||| || ||||| | || || || ||||| ||||| Sbjct 19092503 CTCCAGGGTGATGGTTTTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550 >seq5 Length=28826359 Score = 125 bits (138), Expect = 6e-24 Identities = 170/236 (72%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| || |||||||| || ||||| ||||| | | Sbjct 28457453 CCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 28457512 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||| || || || | || || | |||||| || ||| Sbjct 28457513 AGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 28457572 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | ||| || ||| |||||| Sbjct 28457573 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 28457632 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT-GAATC 21183 |||| ||| ||||||||||| || | ||||| || || ||||||||||| ||||| Sbjct 28457633 TCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTTCGAATC 28457688 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || |||| || || | |||||| ||||||||||| ||||||||||| || | Sbjct 15755890 TCCACCACGAAGCCGAAGTACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGA 15755949 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 ||| ||| || | || |||| || ||||| || | || | | ||| || || || Sbjct 15755950 CAGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGG 15756009 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||||| ||||| |||||| ||| || | ||| ||||| || || Sbjct 15756010 AATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGAC 15756069 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| |||| || || ||||| || ||||| Sbjct 15756070 CTCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 15756117 >seq1 Length=22123056 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| ||||||||||||||||| || ||||| ||||| | || || | |||||||| Sbjct 6630563 ACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCC 6630504 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 ||||| ||||| || | || | | |||||| || ||| | ||| |||||||| | Sbjct 6630503 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 6630444 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 ||||| || || | ||| || || |||||| || | ||| ||||||||| Sbjct 6630443 ATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATGGTCTTG 6630384 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || || | ||||| || || || ||||||||| Sbjct 6630383 CCAGTCAGGGTTTTCACGAAAATCTGCATTTTG 6630351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259169122296