Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq2 138 1e-27
seq5 125 6e-24
seq1 105 6e-18
>seq2
Length=30136903
Score = 138 bits (152), Expect = 1e-27
Identities = 241/343 (70%), Gaps = 6/343 (2%)
Strand=Plus/Minus
Query 23617 CCAATGATGCCGCAGCCCAGCCGGCCGCCAGAATTGCCCGTGGTCTTGCTGAGCGGGTGC 23676
||||||| |||||||| | ||| |||| | |||||| ||||||||||| ||| |||
Sbjct 15750342 CCAATGACACCGCAGCCAATACGGGCGCCGGCATTGCCGGTGGTCTTGCTTAGCTCGTGA 15750283
Query 23677 TCGCCGAGGCCCAGGTCATCGCGGTCCGTGTGCACGACCAGGCTGCGGCCCAATATACTC 23736
| || ||||| |||||| ||| | ||| ||||||| | |||| || | || ||
Sbjct 15750282 CCACCCTTGCCCAAGTCATCAGCGTCGGCGTGGACGACCACGGTGCGTCCTATGATGCTG 15750223
Query 23737 AACGGC-CCAAACAGGGTTATCACGTTGTCGCTCATGTGTATGGCCGTGAGTGCGGTGCA 23795
|||| || ||||| || ||| |||| | ||| | ||||||| | || || ||
Sbjct 15750222 T-CGGCACCGAACAGCGTGATCTTCGAGTCGGTGATGCTGACGGCCGTGGG-GCTGT-CA 15750166
Query 23796 GCCCGCAGAGCGCACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCC 23855
|| || | | | |||||||| |||||| | ||| || | | | || ||| || ||
Sbjct 15750165 -CCGGCCGCCTGGATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCATCGGTGGGGGCACC 15750107
Query 23856 GTGTCTCTGGCGGGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTC 23915
||| || | |||||||||||| ||| | ||| ||||||||||| || ||||
Sbjct 15750106 GTGCTCCTTGTTCCGGGGGTTAAAGTGGGGGCCGGACGACATGCAGCCGTTGGTGTTGTC 15750047
Query 23916 GCCGAATTCGTGCACGTGAAAACCGTGCAGCCCGCGAGGCAAG 23958
||||| |||||||| || || |||||||| || | ||||||
Sbjct 15750046 CCCGAACTCGTGCACATGGAATCCGTGCAGTCC-CTTGGCAAG 15750005
Score = 116 bits (128), Expect = 3e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| ||| | ||| |||||||| || ||||| ||||||| || || || | |||
Sbjct 19092567 AGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCC 19092626
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| || | || || | ||||||||| ||| | || ||||||||
Sbjct 19092627 TCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCC 19092686
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||||| | | | || || |||||| |||| ||| |||||
Sbjct 19092687 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTT 19092746
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAAT 21182
|| || || || ||||| ||||| || ||||||||| ||
Sbjct 19092747 TTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTGTAT 19092785
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007
||| || || || | ||||||| ||| | ||| |||||||| || ||||| |||||||
Sbjct 19092323 TCCGCCACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 19092382
Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067
|| || || | ||||||||||| ||||| || | || || | ||||||||| |||
Sbjct 19092383 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGG 19092442
Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127
| || |||||||| |||||| ||||| | | | || || ||||||
Sbjct 19092443 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCAC 19092502
Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| ||| ||||| || ||||| | || || || ||||| |||||
Sbjct 19092503 CTCCAGGGTGATGGTTTTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550
>seq5
Length=28826359
Score = 125 bits (138), Expect = 6e-24
Identities = 170/236 (72%), Gaps = 1/236 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| |||| || |||||||| || ||||| ||||| | |
Sbjct 28457453 CCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 28457512
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | ||||||||||| || || || | || || | |||||| || |||
Sbjct 28457513 AGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 28457572
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| || || | ||| || ||| ||||||
Sbjct 28457573 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 28457632
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT-GAATC 21183
|||| ||| ||||||||||| || | ||||| || || ||||||||||| |||||
Sbjct 28457633 TCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTTCGAATC 28457688
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007
||| || || |||| || || | |||||| ||||||||||| ||||||||||| || |
Sbjct 15755890 TCCACCACGAAGCCGAAGTACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGA 15755949
Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067
||| ||| || | || |||| || ||||| || | || | | ||| || || ||
Sbjct 15755950 CAGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGG 15756009
Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127
| ||||| ||||| |||||| ||| || | ||| ||||| || ||
Sbjct 15756010 AATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGAC 15756069
Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || ||||||||||| |||| || || ||||| || |||||
Sbjct 15756070 CTCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 15756117
>seq1
Length=22123056
Score = 105 bits (116), Expect = 6e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026
|||| ||||||||||||||||| || ||||| ||||| | || || | ||||||||
Sbjct 6630563 ACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCC 6630504
Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086
||||| ||||| || | || | | |||||| || ||| | ||| |||||||| |
Sbjct 6630503 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 6630444
Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146
||||| || || | ||| || || |||||| || | ||| |||||||||
Sbjct 6630443 ATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATGGTCTTG 6630384
Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|| || | ||||| || || || |||||||||
Sbjct 6630383 CCAGTCAGGGTTTTCACGAAAATCTGCATTTTG 6630351
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422259169122296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |