Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq4 412 4e-110
seq5 154 2e-32
seq2 147 2e-30
seq1 143 3e-29
>seq4
Length=20862834
Score = 412 bits (456), Expect = 4e-110
Identities = 541/744 (73%), Gaps = 4/744 (1%)
Strand=Plus/Minus
Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714
|||| ||||| || ||||||||||| || |||||||| || || |||||| ||| ||||
Sbjct 15863273 AGGCGGAGGCCTCCTTCTGGACCGTGGAAGAGGTGGATCTATCGAAGGACGCGACGGACT 15863214
Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774
||| || | | |||||||||||| | || ||| || ||||| ||||| ||||| |
Sbjct 15863213 GGGCCCGTCTCACTGACAACGAGCGCTACTTTATCTCCCATGTGCTAGCCTTCTTCGCTG 15863154
Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834
|| |||||||| || |||||||||||||||||||| || ||||||||||||| |
Sbjct 15863153 CCTCGGACGGCATTGTTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGATCA 15863094
Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894
| ||||| || |||||||||||||| ||||| ||||||||||| |||||||| || ||||
Sbjct 15863093 CGGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGATGT 15863034
Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACG 116954
| ||||| ||||| ||| | || || ||||| | ||||| || |
Sbjct 15863033 ACAGCGTGCTCATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTCAATG 15862974
Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAG-AAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013
| || ||||| |||||| || |||| | ||||| || ||||| || |||||| ||
Sbjct 15862973 CTATTGAGACCATGCCG-GCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCTGGATATCC 15862915
Query 117014 GGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTC 117073
| | |||| ||| | |||||| | | ||||| |||||||| || || |||||
Sbjct 15862914 TCGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTC 15862855
Query 117074 TTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTG 117133
||| ||||| || ||| | || |||||||| ||||| || || ||||||||||| |||
Sbjct 15862854 TTTAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTG 15862795
Query 117134 ACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTG 117193
|| ||| ||||||||| |||||| | ||||| ||||| || ||||||||||| |
Sbjct 15862794 ACCTTCTCCAACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGGTGCTC 15862735
Query 117194 CTGTTCAAGCATTTGGTGCAGC-GACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGA 117252
||| | ||| | ||||||| | || |||| || |||| ||| |||||| ||| ||
Sbjct 15862734 ATGTATCACCATCTAGTGCAGCGGCCCAAGCG-GGAGCGCATCATCGAGATCATCAGGGA 15862676
Query 117253 CGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACT 117312
|| || | ||||||||| |||||||| ||||| ||||| || | || | || |
Sbjct 15862675 TGCTGTGGAAATCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCAT 15862616
Query 117313 CAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCT 117372
|| || | ||||| || |||||||||||||| ||||| ||||||| |||||
Sbjct 15862615 GAACTGTGTTCTCATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGCT 15862556
Query 117373 GGTCGGCGCCAAGCACTACAACAC 117396
| | | ||| |||||||||
Sbjct 15862555 CGGTGTGGGTAAGATCTACAACAC 15862532
>seq5
Length=28826359
Score = 154 bits (170), Expect = 2e-32
Identities = 179/240 (75%), Gaps = 1/240 (0%)
Strand=Plus/Minus
Query 40677 AACGCTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGA 40736
|||| | |||||| ||||||| ||||| ||||| ||||| ||||| ||||||||| | ||
Sbjct 28457691 AACGATTCGAAAA-TGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACCTTGGA 28457633
Query 40737 CGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCAT 40796
||||| || | |||| | | | | |||||| || || | ||||| ||||||||
Sbjct 28457632 GGTCGAGCCCTCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCAT 28457573
Query 40797 CCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 40856
||| | || ||||| || || |||| ||| || || |||||||| || | ||||| ||
Sbjct 28457572 TCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCT 28457513
Query 40857 CAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||||||||||||| | || ||||| | ||| | ||| || | || ||
Sbjct 28457512 GTCCGACTACAACATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGCGGTGG 28457453
>seq2
Length=30136903
Score = 147 bits (162), Expect = 2e-30
Identities = 166/217 (76%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748
||||| |||||||| || || || || || |||||||||||| | || || || |||| |
Sbjct 19092550 ATGCAGATATTCGTGAAGACTCTGACCGGAAAAACCATCACCCTGGAGGTGGA-GCCATC 19092492
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
||||| | | | |||| | |||| || || | ||||| ||||| |||||| | ||||
Sbjct 19092491 CGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACC 19092433
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| || ||||||| ||| ||||| |||||||| || | ||||| || |||||||
Sbjct 19092432 AGCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACA 19092373
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||||||||| | || || ||| | ||| ||||
Sbjct 19092372 ACATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCG 19092336
Score = 143 bits (158), Expect = 3e-29
Identities = 167/220 (76%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || || || ||||| | || || |||||||||||| | || || || |||
Sbjct 19092781 AAAATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGA-GCC 19092723
Query 40747 A-CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804
| |||||| | | | |||| | |||| || || | ||||| ||||| |||||| | |
Sbjct 19092722 ATCCGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTG 19092664
Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864
||||||| || ||||||| ||| ||||| |||||||| || | ||||| || ||||
Sbjct 19092663 ACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACT 19092604
Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||||||||||| | || || ||| | ||| ||||
Sbjct 19092603 ACAACATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCG 19092564
Score = 127 bits (140), Expect = 2e-24
Identities = 249/362 (69%), Gaps = 7/362 (2%)
Strand=Plus/Plus
Query 139348 CGGCTACGTGCTCGGCCT-GCCGCGCGGCCTGCACGGCTTCCACGTGCACGAGTTCGGCG 139406
|||| | ||||| ||||| ||| | || |||||||| ||||| |||||||||||||| |
Sbjct 15749989 CGGCGAGGTGCTGGGCCTTGCCAAG-GGACTGCACGGATTCCATGTGCACGAGTTCGGGG 15750047
Query 139407 ACGCGAGCAACGGGTGCACGTCGGCCGGCGAGCACTTCAACCCCGCGCGCCGGGACCACG 139466
|| | |||||| |||| |||| ||||| ||||| |||||| | | ||| ||||
Sbjct 15750048 ACAACACCAACGGCTGCATGTCGTCCGGCCCCCACTTTAACCCCCGGAACAAGGAGCACG 15750107
Query 139467 GCGCGCCCGACGCCGAGATCAGGCACGTCGGCGACCTGGGCAACCTCGAGTCGGCGGGCC 139526
| || ||| || |||| | | ||| | |||||| |||||||| || | ||||| |
Sbjct 15750108 GTGCCCCCACCGATGAGAACCGCCACTTGGGCGACTTGGGCAACATCCA---GGCGGCCG 15750164
Query 139527 GCGACGCGCTCACCGAGGTGAGCCTGACGGACGGCGTCG-TGTCCCTGTACGGTCCGCAC 139585
| ||| | ||| | || ||| | || ||| || | | | |||| |||| | ||
Sbjct 15750165 GTGACAGCCCCACGGCCGTCAGCATCACCGAC-TCGAAGATCACGCTGTTCGGTGCCGAC 15750223
Query 139586 AGCATCATCGGACGGAGTCTGGTCGTGCACACGGACAGGGACGATCTGGGCCTCACCGAC 139645
|||||||| ||||| | ||||||| ||| | ||| || || ||||| |
Sbjct 15750224 AGCATCATAGGACGCACCGTGGTCGTCCACGCCGACGCTGATGACTTGGGCAAGGGTGGT 15750283
Query 139646 CATCCATTGAGCAAGACCACCGGCAACTCGGGCGGCCGGCTCGCGTGCGGCATCATCGGG 139705
|| | ||||||||||||||||| | |||| ||| | | ||||| |||| ||
Sbjct 15750284 CACGAGCTAAGCAAGACCACCGGCAATGCCGGCGCCCGTATTGGCTGCGGTGTCATTGGC 15750343
Query 139706 AT 139707
||
Sbjct 15750344 AT 15750345
>seq1
Length=22123056
Score = 143 bits (158), Expect = 3e-29
Identities = 171/232 (74%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || ||||| ||||| || || ||||| ||||||||| |||| || || ||
Sbjct 6630352 AAAATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCC 6630411
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | | |||||| || || | ||||| |||||||| ||| | ||
Sbjct 6630412 TCGGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 6630471
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || | |||| ||| ||||| |||||||| |||| || || | |||||||
Sbjct 6630472 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTAC 6630531
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918
||||||||||||||| |||| |||| | || ||||| | | |||||||
Sbjct 6630532 AACATCCAGAAGGAGTCCACTTTGCACTTGGTATTGCGTCTTCGTGGCGGCG 6630583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219161358560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |