Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4 412 4e-110 seq5 154 2e-32 seq2 147 2e-30 seq1 143 3e-29 >seq4 Length=20862834 Score = 412 bits (456), Expect = 4e-110 Identities = 541/744 (73%), Gaps = 4/744 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| ||||| || ||||||||||| || |||||||| || || |||||| ||| |||| Sbjct 15863273 AGGCGGAGGCCTCCTTCTGGACCGTGGAAGAGGTGGATCTATCGAAGGACGCGACGGACT 15863214 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 ||| || | | |||||||||||| | || ||| || ||||| ||||| ||||| | Sbjct 15863213 GGGCCCGTCTCACTGACAACGAGCGCTACTTTATCTCCCATGTGCTAGCCTTCTTCGCTG 15863154 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 || |||||||| || |||||||||||||||||||| || ||||||||||||| | Sbjct 15863153 CCTCGGACGGCATTGTTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGATCA 15863094 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | ||||| || |||||||||||||| ||||| ||||||||||| |||||||| || |||| Sbjct 15863093 CGGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGATGT 15863034 Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACG 116954 | ||||| ||||| ||| | || || ||||| | ||||| || | Sbjct 15863033 ACAGCGTGCTCATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTCAATG 15862974 Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAG-AAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013 | || ||||| |||||| || |||| | ||||| || ||||| || |||||| || Sbjct 15862973 CTATTGAGACCATGCCG-GCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCTGGATATCC 15862915 Query 117014 GGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTC 117073 | | |||| ||| | |||||| | | ||||| |||||||| || || ||||| Sbjct 15862914 TCGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTC 15862855 Query 117074 TTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTG 117133 ||| ||||| || ||| | || |||||||| ||||| || || ||||||||||| ||| Sbjct 15862854 TTTAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTG 15862795 Query 117134 ACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTG 117193 || ||| ||||||||| |||||| | ||||| ||||| || ||||||||||| | Sbjct 15862794 ACCTTCTCCAACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGGTGCTC 15862735 Query 117194 CTGTTCAAGCATTTGGTGCAGC-GACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGA 117252 ||| | ||| | ||||||| | || |||| || |||| ||| |||||| ||| || Sbjct 15862734 ATGTATCACCATCTAGTGCAGCGGCCCAAGCG-GGAGCGCATCATCGAGATCATCAGGGA 15862676 Query 117253 CGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACT 117312 || || | ||||||||| |||||||| ||||| ||||| || | || | || | Sbjct 15862675 TGCTGTGGAAATCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCAT 15862616 Query 117313 CAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCT 117372 || || | ||||| || |||||||||||||| ||||| ||||||| ||||| Sbjct 15862615 GAACTGTGTTCTCATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGCT 15862556 Query 117373 GGTCGGCGCCAAGCACTACAACAC 117396 | | | ||| ||||||||| Sbjct 15862555 CGGTGTGGGTAAGATCTACAACAC 15862532 >seq5 Length=28826359 Score = 154 bits (170), Expect = 2e-32 Identities = 179/240 (75%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 40677 AACGCTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGA 40736 |||| | |||||| ||||||| ||||| ||||| ||||| ||||| ||||||||| | || Sbjct 28457691 AACGATTCGAAAA-TGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACCTTGGA 28457633 Query 40737 CGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCAT 40796 ||||| || | |||| | | | | |||||| || || | ||||| |||||||| Sbjct 28457632 GGTCGAGCCCTCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCAT 28457573 Query 40797 CCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 40856 ||| | || ||||| || || |||| ||| || || |||||||| || | ||||| || Sbjct 28457572 TCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCT 28457513 Query 40857 CAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||||||||| | || ||||| | ||| | ||| || | || || Sbjct 28457512 GTCCGACTACAACATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGCGGTGG 28457453 >seq2 Length=30136903 Score = 147 bits (162), Expect = 2e-30 Identities = 166/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| |||||||| || || || || || |||||||||||| | || || || |||| | Sbjct 19092550 ATGCAGATATTCGTGAAGACTCTGACCGGAAAAACCATCACCCTGGAGGTGGA-GCCATC 19092492 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | |||| | |||| || || | ||||| ||||| |||||| | |||| Sbjct 19092491 CGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACC 19092433 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || ||||||| ||| ||||| |||||||| || | ||||| || ||||||| Sbjct 19092432 AGCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACA 19092373 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||| | || || ||| | ||| |||| Sbjct 19092372 ACATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCG 19092336 Score = 143 bits (158), Expect = 3e-29 Identities = 167/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || ||||| | || || |||||||||||| | || || || ||| Sbjct 19092781 AAAATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGA-GCC 19092723 Query 40747 A-CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||||| | | | |||| | |||| || || | ||||| ||||| |||||| | | Sbjct 19092722 ATCCGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTG 19092664 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| || ||||||| ||| ||||| |||||||| || | ||||| || |||| Sbjct 19092663 ACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACT 19092604 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||||||| | || || ||| | ||| |||| Sbjct 19092603 ACAACATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCG 19092564 Score = 127 bits (140), Expect = 2e-24 Identities = 249/362 (69%), Gaps = 7/362 (2%) Strand=Plus/Plus Query 139348 CGGCTACGTGCTCGGCCT-GCCGCGCGGCCTGCACGGCTTCCACGTGCACGAGTTCGGCG 139406 |||| | ||||| ||||| ||| | || |||||||| ||||| |||||||||||||| | Sbjct 15749989 CGGCGAGGTGCTGGGCCTTGCCAAG-GGACTGCACGGATTCCATGTGCACGAGTTCGGGG 15750047 Query 139407 ACGCGAGCAACGGGTGCACGTCGGCCGGCGAGCACTTCAACCCCGCGCGCCGGGACCACG 139466 || | |||||| |||| |||| ||||| ||||| |||||| | | ||| |||| Sbjct 15750048 ACAACACCAACGGCTGCATGTCGTCCGGCCCCCACTTTAACCCCCGGAACAAGGAGCACG 15750107 Query 139467 GCGCGCCCGACGCCGAGATCAGGCACGTCGGCGACCTGGGCAACCTCGAGTCGGCGGGCC 139526 | || ||| || |||| | | ||| | |||||| |||||||| || | ||||| | Sbjct 15750108 GTGCCCCCACCGATGAGAACCGCCACTTGGGCGACTTGGGCAACATCCA---GGCGGCCG 15750164 Query 139527 GCGACGCGCTCACCGAGGTGAGCCTGACGGACGGCGTCG-TGTCCCTGTACGGTCCGCAC 139585 | ||| | ||| | || ||| | || ||| || | | | |||| |||| | || Sbjct 15750165 GTGACAGCCCCACGGCCGTCAGCATCACCGAC-TCGAAGATCACGCTGTTCGGTGCCGAC 15750223 Query 139586 AGCATCATCGGACGGAGTCTGGTCGTGCACACGGACAGGGACGATCTGGGCCTCACCGAC 139645 |||||||| ||||| | ||||||| ||| | ||| || || ||||| | Sbjct 15750224 AGCATCATAGGACGCACCGTGGTCGTCCACGCCGACGCTGATGACTTGGGCAAGGGTGGT 15750283 Query 139646 CATCCATTGAGCAAGACCACCGGCAACTCGGGCGGCCGGCTCGCGTGCGGCATCATCGGG 139705 || | ||||||||||||||||| | |||| ||| | | ||||| |||| || Sbjct 15750284 CACGAGCTAAGCAAGACCACCGGCAATGCCGGCGCCCGTATTGGCTGCGGTGTCATTGGC 15750343 Query 139706 AT 139707 || Sbjct 15750344 AT 15750345 >seq1 Length=22123056 Score = 143 bits (158), Expect = 3e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| ||||| || || ||||| ||||||||| |||| || || || Sbjct 6630352 AAAATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCC 6630411 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| |||||||| ||| | || Sbjct 6630412 TCGGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 6630471 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || | |||| ||| ||||| |||||||| |||| || || | ||||||| Sbjct 6630472 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTAC 6630531 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||||| |||| |||| | || ||||| | | ||||||| Sbjct 6630532 AACATCCAGAAGGAGTCCACTTTGCACTTGGTATTGCGTCTTCGTGGCGGCG 6630583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219161358560