Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq5 125 6e-24 seq1 125 6e-24 seq2 100 2e-16 >seq5 Length=28826359 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 28457471 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 28457530 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| || || || || | |||||||||||| Sbjct 28457531 AGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 28457590 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||| ||||||| ||| || |||||| Sbjct 28457591 ATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTG 28457650 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || || ||||| ||||| ||||||||||| || Sbjct 28457651 CCAGTGAGAGTTTTCACGAAGATTTGCATTTT 28457682 >seq1 Length=22123056 Score = 125 bits (138), Expect = 6e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 ||||||||||||| ||| ||||||||| |||||||||||| || || |||| Sbjct 6630566 AATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCC 6630507 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| || || |||||||| ||||| ||||| || || || || | |||||||||||| Sbjct 6630506 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 6630447 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | | | ||||| ||| ||||| | ||| || ||| Sbjct 6630446 TGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATGGTC 6630387 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 ||||| ||||| || ||||| || || ||||| ||| || Sbjct 6630386 TTGCCAGTCAGGGTTTTCACGAAAATCTGCATTTTGGCT 6630348 >seq2 Length=30136903 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| ||||||||||| || ||| | || ||| Sbjct 19092570 ACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCC 19092629 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || | ||||| ||||| || || | |||||||||||| Sbjct 19092630 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGG 19092689 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||||||||||| ||| || || || Sbjct 19092690 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTT 19092749 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || |||| || ||||||||||| ||||| ||| Sbjct 19092750 CCAGTCAAGGTTTTCACAAAGATCTGCATTTTG 19092782 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| ||||||||||| || ||| | || ||| Sbjct 19092342 ACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCC 19092401 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| ||||| || || | |||||||||||| Sbjct 19092402 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 19092461 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||||||||||| ||| || || || Sbjct 19092462 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTT 19092521 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||| || || ||||| Sbjct 19092522 CCGGTCAGAGTCTTCACGAATATCTGCAT 19092550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075171110126