Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq5 125 6e-24
seq1 125 6e-24
seq2 100 2e-16
>seq5
Length=28826359
Score = 125 bits (138), Expect = 6e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||||||||| || ||||||||| |||||||||||| ||| ||| | || |||
Sbjct 28457471 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 28457530
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| |||| ||||| || || || || | ||||||||||||
Sbjct 28457531 AGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 28457590
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| ||| ||||||| ||| || ||||||
Sbjct 28457591 ATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTG 28457650
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339
|| || ||||| ||||| ||||||||||| ||
Sbjct 28457651 CCAGTGAGAGTTTTCACGAAGATTTGCATTTT 28457682
>seq1
Length=22123056
Score = 125 bits (138), Expect = 6e-24
Identities = 159/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184
||||||||||||| ||| ||||||||| |||||||||||| || || ||||
Sbjct 6630566 AATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCC 6630507
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
||||| || || |||||||| ||||| ||||| || || || || | ||||||||||||
Sbjct 6630506 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 6630447
Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304
|| || ||| || | | | | ||||| ||| ||||| | ||| || |||
Sbjct 6630446 TGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATGGTC 6630387
Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343
||||| ||||| || ||||| || || ||||| ||| ||
Sbjct 6630386 TTGCCAGTCAGGGTTTTCACGAAAATCTGCATTTTGGCT 6630348
>seq2
Length=30136903
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| || || || ||||||||| ||||||||||| || ||| | || |||
Sbjct 19092570 ACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCC 19092629
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| || | ||||| ||||| || || | ||||||||||||
Sbjct 19092630 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGG 19092689
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| ||||||||||| ||| || || ||
Sbjct 19092690 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTT 19092749
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
|| |||| || ||||||||||| ||||| |||
Sbjct 19092750 CCAGTCAAGGTTTTCACAAAGATCTGCATTTTG 19092782
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| || || || ||||||||| ||||||||||| || ||| | || |||
Sbjct 19092342 ACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCC 19092401
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| || | ||||| ||||| || || | ||||||||||||
Sbjct 19092402 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 19092461
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| ||||||||||| ||| || || ||
Sbjct 19092462 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTT 19092521
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||||||||||||| || || |||||
Sbjct 19092522 CCGGTCAGAGTCTTCACGAATATCTGCAT 19092550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395075171110126
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |