Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq5 118 2e-21 seq4 114 3e-20 >seq5 Length=28826359 Score = 118 bits (130), Expect = 2e-21 Identities = 284/425 (67%), Gaps = 10/425 (2%) Strand=Plus/Minus Query 35383 CGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGC 35442 |||| | || | ||||||| |||| || || || || || || |||||||| |||||||| Sbjct 2480618 CGATCGCGCCGTGGGAGATCTGGGTCCAGTCTATGGCTTTCAGTGGCGTCACTTTGGTGC 2480559 Query 35443 TGAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTG-GCCAATA 35501 ||||||| || || || || | || ||||| || || |||||| ||||| Sbjct 2480558 CGAATATGGCACTTGCGACGATGACTACAGCGGCAAGGGCATCGACCAATTGCGCCAAG- 2480500 Query 35502 TACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATC 35561 || | | ||| | || | ||||| ||| | | || || ||| | |||||||||| Sbjct 2480499 TAATTGACACCATCAGGCATAATCCGTCCGATCGTCGCATCATCATGTCTGCATGGAATC 2480440 Query 35562 CTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGT- 35619 | |||| | | | ||||| || || || ||||| || || || || || || || Sbjct 2480439 CCCTGGACATACCCAAAATGGCACTCCCGCCCTGCCA-TTGTCTGGCACAGTTCTACGTC 2480381 Query 35620 -----GGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTG 35674 | | ||||| |||| |||||| |||||||||| |||| || | || | Sbjct 2480380 TCGCAGACCCGCGGAGAGCTGTCCTGCCAGCTGTATCAGCGCAGCGCCGACATGGGCCTT 2480321 Query 35675 GGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTG 35734 |||||||| ||||| || ||||| ||| | || ||||| | |||| ||| | | Sbjct 2480320 GGCGTGCCATTCAACATCGCATCCTACGCCCTGCTGACCTACATGATAGCCCATGTAACT 2480261 Query 35735 GGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCAC 35794 || | || |||| || ||||||| ||| | || ||||| || | ||| || ||| Sbjct 2480260 GGCTTGAAGACGGGCGACTTTATCCACACCATGGGCGACGCTCATGTGTATCTTAACCAT 2480201 Query 35795 ATTGA 35799 |||| Sbjct 2480200 GTTGA 2480196 >seq4 Length=20862834 Score = 114 bits (126), Expect = 3e-20 Identities = 294/445 (66%), Gaps = 7/445 (2%) Strand=Plus/Minus Query 101915 ATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTC 101974 ||| |||||||||| || || ||||||||||||||||| || || || || || || Sbjct 15862887 ATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGCGGCAGCTTTGCCTCGATCTTT 15862828 Query 101975 TGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGG 102034 ||| | ||||| | ||| | |||| ||||| |||| |||||| ||| | || || | Sbjct 15862827 TGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGT 15862768 Query 102035 GACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTT--TGTTGATA 102092 |||||||||||||| |||||||||| |||| || | | | | || | Sbjct 15862767 GACGAAGGTCTTCACTGCGACTTTGC---GGTGCTCATGTATCACCATCTAGTGCAGCGG 15862711 Query 102093 CCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152 ||| | | | || | || | || || ||| || || || ||| || || || | Sbjct 15862710 CCCAAGC--GGGAGCGCATCATCGAGATCATCAGGGATGCTGTGGAAATCGAGCAGGAGT 15862653 Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212 | ||||| | ||||||| || || || | || |||||||| | ||| ||||| Sbjct 15862652 TCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCATGAACTGTGTTCTCATGTCCCAGT 15862593 Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATG 102272 |||| || || ||||| ||| || | | || | || | | ||| ||| || Sbjct 15862592 ACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGCTCGGTGTGGGTAAGATCTACAACA 15862533 Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332 || || || ||| |||||||| | || || || || ||||| ||||| |||| Sbjct 15862532 CTAAGAATCCTTTCAATTTCATGGAGATGATCTCGCTGGACGGAAAGACAAACTTCTTTG 15862473 Query 102333 AAAAGAGAGTCGCCGAGTATCAACG 102357 | |||| || |||||||| || || Sbjct 15862472 AGAAGAAGGTGGCCGAGTACCAGCG 15862448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583923925730