Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq5 118 2e-21
seq4 114 3e-20
>seq5
Length=28826359
Score = 118 bits (130), Expect = 2e-21
Identities = 284/425 (67%), Gaps = 10/425 (2%)
Strand=Plus/Minus
Query 35383 CGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGC 35442
|||| | || | ||||||| |||| || || || || || || |||||||| ||||||||
Sbjct 2480618 CGATCGCGCCGTGGGAGATCTGGGTCCAGTCTATGGCTTTCAGTGGCGTCACTTTGGTGC 2480559
Query 35443 TGAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTG-GCCAATA 35501
||||||| || || || || | || ||||| || || |||||| |||||
Sbjct 2480558 CGAATATGGCACTTGCGACGATGACTACAGCGGCAAGGGCATCGACCAATTGCGCCAAG- 2480500
Query 35502 TACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATC 35561
|| | | ||| | || | ||||| ||| | | || || ||| | ||||||||||
Sbjct 2480499 TAATTGACACCATCAGGCATAATCCGTCCGATCGTCGCATCATCATGTCTGCATGGAATC 2480440
Query 35562 CTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGT- 35619
| |||| | | | ||||| || || || ||||| || || || || || || ||
Sbjct 2480439 CCCTGGACATACCCAAAATGGCACTCCCGCCCTGCCA-TTGTCTGGCACAGTTCTACGTC 2480381
Query 35620 -----GGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTG 35674
| | ||||| |||| |||||| |||||||||| |||| || | || |
Sbjct 2480380 TCGCAGACCCGCGGAGAGCTGTCCTGCCAGCTGTATCAGCGCAGCGCCGACATGGGCCTT 2480321
Query 35675 GGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTG 35734
|||||||| ||||| || ||||| ||| | || ||||| | |||| ||| | |
Sbjct 2480320 GGCGTGCCATTCAACATCGCATCCTACGCCCTGCTGACCTACATGATAGCCCATGTAACT 2480261
Query 35735 GGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCAC 35794
|| | || |||| || ||||||| ||| | || ||||| || | ||| || |||
Sbjct 2480260 GGCTTGAAGACGGGCGACTTTATCCACACCATGGGCGACGCTCATGTGTATCTTAACCAT 2480201
Query 35795 ATTGA 35799
||||
Sbjct 2480200 GTTGA 2480196
>seq4
Length=20862834
Score = 114 bits (126), Expect = 3e-20
Identities = 294/445 (66%), Gaps = 7/445 (2%)
Strand=Plus/Minus
Query 101915 ATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTC 101974
||| |||||||||| || || ||||||||||||||||| || || || || || ||
Sbjct 15862887 ATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGCGGCAGCTTTGCCTCGATCTTT 15862828
Query 101975 TGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGG 102034
||| | ||||| | ||| | |||| ||||| |||| |||||| ||| | || || |
Sbjct 15862827 TGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGT 15862768
Query 102035 GACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTT--TGTTGATA 102092
|||||||||||||| |||||||||| |||| || | | | | || |
Sbjct 15862767 GACGAAGGTCTTCACTGCGACTTTGC---GGTGCTCATGTATCACCATCTAGTGCAGCGG 15862711
Query 102093 CCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152
||| | | | || | || | || || ||| || || || ||| || || || |
Sbjct 15862710 CCCAAGC--GGGAGCGCATCATCGAGATCATCAGGGATGCTGTGGAAATCGAGCAGGAGT 15862653
Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212
| ||||| | ||||||| || || || | || |||||||| | ||| |||||
Sbjct 15862652 TCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCATGAACTGTGTTCTCATGTCCCAGT 15862593
Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATG 102272
|||| || || ||||| ||| || | | || | || | | ||| ||| ||
Sbjct 15862592 ACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGCTCGGTGTGGGTAAGATCTACAACA 15862533
Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332
|| || || ||| |||||||| | || || || || ||||| ||||| ||||
Sbjct 15862532 CTAAGAATCCTTTCAATTTCATGGAGATGATCTCGCTGGACGGAAAGACAAACTTCTTTG 15862473
Query 102333 AAAAGAGAGTCGCCGAGTATCAACG 102357
| |||| || |||||||| || ||
Sbjct 15862472 AGAAGAAGGTGGCCGAGTACCAGCG 15862448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989583923925730
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |