Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq5 562 4e-155
seq4 132 6e-26
>seq5
Length=28826359
Score = 562 bits (622), Expect = 4e-155
Identities = 1263/1878 (67%), Gaps = 25/1878 (1%)
Strand=Plus/Minus
Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095
|||||| | || ||||| || | || || ||||| || |||| ||||||||||||
Sbjct 15308262 CTTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCC 15308203
Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155
|||||||| || |||| | ||||||| || || | ||| || | ||
Sbjct 15308202 GGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGG 15308143
Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215
||||||| || | ||| | || ||||||||||| || || || || || || |||||
Sbjct 15308142 CTCTGCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGC 15308083
Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62274
|||||| || | | ||| || ||||||||| | ||||||||||| |||| || |
Sbjct 15308082 CATTTTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCG-AACCT 15308024
Query 62275 CTTCTGGAAG-GTTTGTAT-TCT-GAATGGATCCACCATCTACCA-TAATCCTATTCTTG 62330
|| |||| |||| || ||| ||||||| || || || | | || |||| ||
Sbjct 15308023 TTTGGGGAATAGTTTCAATATCTTGAATGGAGCC-CCTGCTGGAAATTATTTTATTTTTC 15307965
Query 62331 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390
|||||||||| |||||| | ||| |||||| | || | | ||| | || || |||
Sbjct 15307964 ATCTCATCATCCCATAAGTCCAACTCTGTTAAATCCCTCAATAAATGATGATTGACCACT 15307905
Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450
|| ||||| ||||| ||||||| | || |||||||| ||||||| ||||| | ||
Sbjct 15307904 TGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGAT 15307845
Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62510
|| ||||| |||| |||||| ||||| ||||| || ||||| || || || || || |
Sbjct 15307844 TCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAA 15307785
Query 62511 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGAC 62570
|| |||| |||| || | || | ||||| || || ||||| ||| || | ||
Sbjct 15307784 TTCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCCCATAGGTTCGTT 15307725
Query 62571 GGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62629
|| | |||||||||||| || || || | | || |||| ||||
Sbjct 15307724 GGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACT-TCCTTCATA 15307666
Query 62630 TGTATCATATGGTCCT--TCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687
|| |||||||| || | ||| ||| |||| |||||| || |||| || || ||
Sbjct 15307665 GGTTTCATATGGACCAAATGCTTG--AGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAA 15307608
Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747
||||| |||||||| || | | |||| | ||||| ||| ||| | ||| ||
Sbjct 15307607 TAAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAA 15307548
Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807
| | ||| || ||||| |||| ||||||| ||| |||||||| || | ||| ||
Sbjct 15307547 CGCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTT 15307488
Query 62808 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62867
||| || | | |||||||| | ||| ||||| || || ||||||||||| || |||
Sbjct 15307487 AAATTGGACTTCTTGGCTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTTGTTAAGA 15307428
Query 62868 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCT 62924
||| || ||| |||| || || || | ||| |||||| | | | ||
Sbjct 15307427 TTTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTTCTGCT 15307368
Query 62925 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC 62984
|||| |||||||||| ||| | || || | ||| || || || | ||||| || |
Sbjct 15307367 GTTACGAACATGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAGGTGCT 15307308
Query 62985 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 63044
| || | | || || || || | |||||| || || ||||| || | ||||||||||
Sbjct 15307307 GAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGA 15307248
Query 63045 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63104
|| |||||| | || || | ||||||| |||| ||| |||| |||||||||| | ||
Sbjct 15307247 TTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCACTTGC 15307188
Query 63105 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTC 63163
||||||||||| || ||| | | | || | | | | |||| | | ||||| |
Sbjct 15307187 GATTCTATAATGGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTCGCACGTCCTT-C 15307129
Query 63164 TCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGG 63223
| || ||| ||| | | ||| || | || |||||||||| | | | |||
Sbjct 15307128 TTGCTCATATTTGACATAGAGTTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAGG 15307069
Query 63224 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63283
||||| || ||||||||||| ||||| | | | ||| || |||||||| || ||
Sbjct 15307068 ACATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCTCAACACGTTTCATGAAAAG 15307009
Query 63284 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATT 63343
|||||||||||| | ||| ||| ||||| | || || | ||| || ||||| || ||
Sbjct 15307008 ATCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCTCGGTTTTCTTCTTTTCCAGTGTT 15306949
Query 63344 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63403
|||| || || | ||| | | || ||| |||||||| || || || || || || |
Sbjct 15306948 TCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAA 15306889
Query 63404 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63463
| ||||| | ||| ||||||||||| | |||| ||| |||||| |||||||
Sbjct 15306888 GGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGAGCCACATTATTAAAAACTCT 15306829
Query 63464 CAACATTGGAA-TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGG 63522
|||||||||| |||| || || || |||| || || || | || | || | |
Sbjct 15306828 TAACATTGGAACTAAT-CCATTCGACGTACCGTTCGTTCCACATATTGAAGTGCCTTTAG 15306770
Query 63523 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63582
||||||| | | | ||| || ||||| ||||| ||| || || | ||| |||
Sbjct 15306769 CACGAAT-GCAATGAACATTAGTCCGATTCCACCTGCTGATTTGGAAATCAGTGCACATT 15306711
Query 63583 GTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGA--TCATGTTAAGTAGAAAACA 63640
||| | | | | | || ||||| || ||| ||| |||| | | ||||||||
Sbjct 15306710 GTTCAACTGATTTAAAAATACCTTCAATTGAATC--CGAATTCATTGTCAAAAGAAAACA 15306653
Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700
|||| ||| | ||| | || | ||| ||| | || || || || ||||||||
Sbjct 15306652 CGAGGACAATTGAGGTCGATTTGTAGCAGCAGCAAAAAGCGTTGGCGAGGCATGCGTAAA 15306593
Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760
|| |||||| ||||| ||||| || || | || | || ||||| | ||||||
Sbjct 15306592 GTATCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGCATCAATATCGTCTCCATGAAT 15306533
Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820
|| | ||||| ||||| | |||||| || || | ||| ||||||| ||||| ||
Sbjct 15306532 ACCAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCTGCAATTTTCCCATTTATCTT 15306473
Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880
| | ||||| || | || ||||| ||||||||||| || ||| ||||| ||
Sbjct 15306472 AAGTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCAAAATCTCGGTC 15306413
Query 63881 GTAAATAATAACCGAATT 63898
||||||||| | || ||
Sbjct 15306412 ATAAATAATAGCAGAGTT 15306395
>seq4
Length=20862834
Score = 132 bits (146), Expect = 6e-26
Identities = 350/532 (66%), Gaps = 3/532 (1%)
Strand=Plus/Plus
Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644
|| || |||||||| ||||| ||||| | || | ||||| || || || || |||
Sbjct 15862742 GCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCG 15862801
Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATT 33704
||||| || |||||||| || |||||||| || || || || ||| ||||||||||
Sbjct 15862802 GGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTAAAGAAGATT 15862861
Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTGTCATG--TATC 33761
||||| || || ||||||||||||| | ||| || | || || | || | ||||
Sbjct 15862862 CCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 15862921
Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821
|| ||||| || ||||| |||||| ||||| || || || ||||| ||
Sbjct 15862922 CAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAAC 15862981
Query 33822 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33881
| |||| || | || | || || || || | | || ||||| ||
Sbjct 15862982 AAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 15863041
Query 33882 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 33941
|| || | || || ||||| ||||| || |||||||| || | ||||| || ||||||
Sbjct 15863042 GAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCCGTGATCTGC 15863101
Query 33942 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAA 34001
|| || || ||| || || | | ||| || || || || || || ||| || ||
Sbjct 15863102 ACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAG 15863161
Query 34002 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 34061
|| || | ||||| ||||| || |||| || || ||| || |
Sbjct 15863162 AAGGCTAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGTC 15863221
Query 34062 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113
|| || |||| |||||| |||||||| ||||| || || ||||| ||||
Sbjct 15863222 GCGTCCTTCGATAGATCCACCTCTTCCACGGTCCAGAAGGAGGCCTCCGCCT 15863273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817552763680
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