Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 562 4e-155 seq4 132 6e-26 >seq5 Length=28826359 Score = 562 bits (622), Expect = 4e-155 Identities = 1263/1878 (67%), Gaps = 25/1878 (1%) Strand=Plus/Minus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 |||||| | || ||||| || | || || ||||| || |||| |||||||||||| Sbjct 15308262 CTTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCC 15308203 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 |||||||| || |||| | ||||||| || || | ||| || | || Sbjct 15308202 GGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGG 15308143 Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215 ||||||| || | ||| | || ||||||||||| || || || || || || ||||| Sbjct 15308142 CTCTGCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGC 15308083 Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62274 |||||| || | | ||| || ||||||||| | ||||||||||| |||| || | Sbjct 15308082 CATTTTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCG-AACCT 15308024 Query 62275 CTTCTGGAAG-GTTTGTAT-TCT-GAATGGATCCACCATCTACCA-TAATCCTATTCTTG 62330 || |||| |||| || ||| ||||||| || || || | | || |||| || Sbjct 15308023 TTTGGGGAATAGTTTCAATATCTTGAATGGAGCC-CCTGCTGGAAATTATTTTATTTTTC 15307965 Query 62331 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390 |||||||||| |||||| | ||| |||||| | || | | ||| | || || ||| Sbjct 15307964 ATCTCATCATCCCATAAGTCCAACTCTGTTAAATCCCTCAATAAATGATGATTGACCACT 15307905 Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450 || ||||| ||||| ||||||| | || |||||||| ||||||| ||||| | || Sbjct 15307904 TGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGAT 15307845 Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62510 || ||||| |||| |||||| ||||| ||||| || ||||| || || || || || | Sbjct 15307844 TCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAA 15307785 Query 62511 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGAC 62570 || |||| |||| || | || | ||||| || || ||||| ||| || | || Sbjct 15307784 TTCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCCCATAGGTTCGTT 15307725 Query 62571 GGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62629 || | |||||||||||| || || || | | || |||| |||| Sbjct 15307724 GGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACT-TCCTTCATA 15307666 Query 62630 TGTATCATATGGTCCT--TCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 || |||||||| || | ||| ||| |||| |||||| || |||| || || || Sbjct 15307665 GGTTTCATATGGACCAAATGCTTG--AGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAA 15307608 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 ||||| |||||||| || | | |||| | ||||| ||| ||| | ||| || Sbjct 15307607 TAAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAA 15307548 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 | | ||| || ||||| |||| ||||||| ||| |||||||| || | ||| || Sbjct 15307547 CGCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTT 15307488 Query 62808 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62867 ||| || | | |||||||| | ||| ||||| || || ||||||||||| || ||| Sbjct 15307487 AAATTGGACTTCTTGGCTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTTGTTAAGA 15307428 Query 62868 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCT 62924 ||| || ||| |||| || || || | ||| |||||| | | | || Sbjct 15307427 TTTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTTCTGCT 15307368 Query 62925 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC 62984 |||| |||||||||| ||| | || || | ||| || || || | ||||| || | Sbjct 15307367 GTTACGAACATGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAGGTGCT 15307308 Query 62985 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 63044 | || | | || || || || | |||||| || || ||||| || | |||||||||| Sbjct 15307307 GAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGA 15307248 Query 63045 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63104 || |||||| | || || | ||||||| |||| ||| |||| |||||||||| | || Sbjct 15307247 TTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCACTTGC 15307188 Query 63105 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTC 63163 ||||||||||| || ||| | | | || | | | | |||| | | ||||| | Sbjct 15307187 GATTCTATAATGGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTCGCACGTCCTT-C 15307129 Query 63164 TCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGG 63223 | || ||| ||| | | ||| || | || |||||||||| | | | ||| Sbjct 15307128 TTGCTCATATTTGACATAGAGTTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAGG 15307069 Query 63224 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63283 ||||| || ||||||||||| ||||| | | | ||| || |||||||| || || Sbjct 15307068 ACATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCTCAACACGTTTCATGAAAAG 15307009 Query 63284 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATT 63343 |||||||||||| | ||| ||| ||||| | || || | ||| || ||||| || || Sbjct 15307008 ATCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCTCGGTTTTCTTCTTTTCCAGTGTT 15306949 Query 63344 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63403 |||| || || | ||| | | || ||| |||||||| || || || || || || | Sbjct 15306948 TCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAA 15306889 Query 63404 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63463 | ||||| | ||| ||||||||||| | |||| ||| |||||| ||||||| Sbjct 15306888 GGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGAGCCACATTATTAAAAACTCT 15306829 Query 63464 CAACATTGGAA-TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGG 63522 |||||||||| |||| || || || |||| || || || | || | || | | Sbjct 15306828 TAACATTGGAACTAAT-CCATTCGACGTACCGTTCGTTCCACATATTGAAGTGCCTTTAG 15306770 Query 63523 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63582 ||||||| | | | ||| || ||||| ||||| ||| || || | ||| ||| Sbjct 15306769 CACGAAT-GCAATGAACATTAGTCCGATTCCACCTGCTGATTTGGAAATCAGTGCACATT 15306711 Query 63583 GTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGA--TCATGTTAAGTAGAAAACA 63640 ||| | | | | | || ||||| || ||| ||| |||| | | |||||||| Sbjct 15306710 GTTCAACTGATTTAAAAATACCTTCAATTGAATC--CGAATTCATTGTCAAAAGAAAACA 15306653 Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 |||| ||| | ||| | || | ||| ||| | || || || || |||||||| Sbjct 15306652 CGAGGACAATTGAGGTCGATTTGTAGCAGCAGCAAAAAGCGTTGGCGAGGCATGCGTAAA 15306593 Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760 || |||||| ||||| ||||| || || | || | || ||||| | |||||| Sbjct 15306592 GTATCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGCATCAATATCGTCTCCATGAAT 15306533 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 || | ||||| ||||| | |||||| || || | ||| ||||||| ||||| || Sbjct 15306532 ACCAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCTGCAATTTTCCCATTTATCTT 15306473 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 | | ||||| || | || ||||| ||||||||||| || ||| ||||| || Sbjct 15306472 AAGTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCAAAATCTCGGTC 15306413 Query 63881 GTAAATAATAACCGAATT 63898 ||||||||| | || || Sbjct 15306412 ATAAATAATAGCAGAGTT 15306395 >seq4 Length=20862834 Score = 132 bits (146), Expect = 6e-26 Identities = 350/532 (66%), Gaps = 3/532 (1%) Strand=Plus/Plus Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 || || |||||||| ||||| ||||| | || | ||||| || || || || ||| Sbjct 15862742 GCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCG 15862801 Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATT 33704 ||||| || |||||||| || |||||||| || || || || ||| |||||||||| Sbjct 15862802 GGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTAAAGAAGATT 15862861 Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTGTCATG--TATC 33761 ||||| || || ||||||||||||| | ||| || | || || | || | |||| Sbjct 15862862 CCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 15862921 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 || ||||| || ||||| |||||| ||||| || || || ||||| || Sbjct 15862922 CAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAAC 15862981 Query 33822 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33881 | |||| || | || | || || || || | | || ||||| || Sbjct 15862982 AAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 15863041 Query 33882 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 33941 || || | || || ||||| ||||| || |||||||| || | ||||| || |||||| Sbjct 15863042 GAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCCGTGATCTGC 15863101 Query 33942 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAA 34001 || || || ||| || || | | ||| || || || || || || ||| || || Sbjct 15863102 ACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAG 15863161 Query 34002 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 34061 || || | ||||| ||||| || |||| || || ||| || | Sbjct 15863162 AAGGCTAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGTC 15863221 Query 34062 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 || || |||| |||||| |||||||| ||||| || || ||||| |||| Sbjct 15863222 GCGTCCTTCGATAGATCCACCTCTTCCACGGTCCAGAAGGAGGCCTCCGCCT 15863273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817552763680