Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5 434 1e-116 >seq5 Length=28826359 Score = 434 bits (480), Expect = 1e-116 Identities = 1236/1865 (66%), Gaps = 51/1865 (3%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || |||| ||| | || | || | |||||| | | ||| |||||||| ||| Sbjct 15308258 TCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCCGGTT 15308199 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| || | |||| | ||||||| || |||| |||| |||| | || | Sbjct 15308198 TTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGGCTCT 15308139 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||| | | | | || ||||||||||| ||||| |||||||| || || |||||| Sbjct 15308138 GCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATT 15308079 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | | ||||| || || ||||| || |||||||| | | | || | Sbjct 15308078 TTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCGAACCTTTTGG 15308019 Query 37030 GGTAAA---TCTAAATGTTGAATAGAACCATTA-TGTAACACAATTGTATTCTTTATGTC 37085 || | | || | || |||||| || || | || || | ||| |||| || || || Sbjct 15308018 GGAATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAA-ATTATTTTATTTTTCATCTC 15307960 Query 37086 ATTATTCCACATATTTCTACT-TATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 || || ||| | | | | ||| | ||| || ||||||| || |||| || || |||| Sbjct 15307959 ATCATCCCATA-AGTCCAACTCTGTTAAATCCCTCAATAAATGATGATTGACCACTTGAA 15307901 Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204 | || ||||||||||||| ||| ||||| ||||| | ||||||||||| | || || | Sbjct 15307900 ATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGATTCGT 15307841 Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264 |||||| | ||||| | |||||||| |||||||| || |||| || | ||| | Sbjct 15307840 TATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAATTCC 15307781 Query 37265 TCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATT-CCAATCCCATAAATCTGTTGGG 37323 | | ||| || | ||||| |||| ||| | || ||||||||||| | ||||| Sbjct 15307780 TAATTCCGTGCTTTTTAATG-TCTTCTTTCAGGCTTTGCCAATCCCATAGGTTCGTTGGA 15307722 Query 37324 TTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTC 37383 | || ||||||||||||||||||||| ||||| || | ||| | | ||| || Sbjct 15307721 GTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACTTCCTTCATAGGTT 15307662 Query 37384 TCATAAGGTCCGTAAAT--TTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441 ||||| || || |||| || ||| ||||| ||||||| |||||| || || |||| | Sbjct 15307661 TCATATGGACC--AAATGCTTGAGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAATAAA 15307604 Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501 ||||||| || |||||| ||||| | ||||||||||| || | | | | | || Sbjct 15307603 TTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAACGCA 15307544 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 ||| || || | ||||| | ||| |||| ||| ||||| || || | ||| | || Sbjct 15307543 TTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTTAAAT 15307484 Query 37562 TAGA--TCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATT 37619 | || ||| | | |||| || || ||||| ||||| ||||| ||||| || ||||| Sbjct 15307483 TGGACTTCTTG--GCTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTTGTTAAGATT 15307426 Query 37620 TTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATT-----A 37674 ||| | | |||| || | | | | || || | ||| || ||||||| || Sbjct 15307425 TTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAA-AT-CATACGTTTTTTCTGCT 15307368 Query 37675 TTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTA 37734 | || || | ||| | || || ||| ||| || ||||| | ||||| | | Sbjct 15307367 GTTACGAACATGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATC--AGGTG 15307310 Query 37735 CTAA--ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTT 37792 || | | | | ||| |||||||| | |||||| || |||| || || | ||| || Sbjct 15307309 CTGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTT 15307250 Query 37793 GATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTT 37852 ||||| ||| |||| || ||||| ||| | || || || || | || ||| | || Sbjct 15307249 GATTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCACTT 15307190 Query 37853 GAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAAC-GATCGCTT-TAAttttttt 37910 | | || ||||| | ||||||| |||| || | ||| || | | || Sbjct 15307189 GCGATTCTATAATGGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTCGCACGTCCTT 15307130 Query 37911 CTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTC-CCCCATACATCGCATAATC 37969 ||| || |||| | ||| | || || |||| ||| ||||| ||||| | | Sbjct 15307129 CTT--GCTCATATTTGACATA-GAGTTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGC 15307073 Query 37970 CTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAA 38029 | ||||||| ||||||||| | ||||| ||||| | || || |||| ||| | Sbjct 15307072 CAGGACATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCTCAACACGTTTCATGA 15307013 Query 38030 ATAAATCAGGTACCCATAATGCAGTAAATAA-ATCTTTGGTTCTATATTCTTCGTTCCCT 38088 | | |||||| | |||||| || ||||| || ||| | || | |||||| || | Sbjct 15307012 AAAGATCAGGAATCCATAAAGC-GTAAAAAAGATCACGTGCTCGGTTTTCTTCTTT---T 15306957 Query 38089 ACATTCTTTCTT---AAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAA 38145 || | |||||| | | || ||| || || | ||| | ||||| || |||| |||| Sbjct 15306956 CCAGTGTTTCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATAA 15306897 Query 38146 ATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTA 38205 || | | || || |||||||| |||||||||||| || ||||| | | |||||| Sbjct 15306896 ATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGAGCCACATTATTA 15306837 Query 38206 TATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTA 38265 | | ||||||||| || |||| ||||| || | ||||| | || |||| |||| Sbjct 15306836 AAAACTCTTAACATTGGAACTAATCCATTCGACGTACCGTTCGTTCCACATATTGAAGTG 15306777 Query 38266 CCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAA 38325 || ||||| || || | | | | | ||| ||||||||||| ||| || || | Sbjct 15306776 CCTTTAGCACGAAT-GCAATGAACATTAGTCCGATTCCACCTGCTGATTTGGAAATCAGT 15306718 Query 38326 GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCC---TTTATTGGTAGT 38382 || ||||||| | | | ||| |||||||| || || |||| || |||| | Sbjct 15306717 GCACATTGTTCAACTGATTTAAAAATACCTTCAAT--TG-AATCCGAATTCATTGTCAAA 15306661 Query 38383 ATAAAACAACTAGACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGC 38441 | |||||| |||| |||||| | || || | || ||| | || || || || Sbjct 15306660 AGAAAACACGAGGACAATTGAGGTCGAT-TTGTAGCAGCAGCAAAAAGCGTTGGCGAGGC 15306602 Query 38442 ATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACC 38501 ||| | || || ||| |||| || || ||||| | | | |||| ||||| | Sbjct 15306601 ATGCGTAAAGTATCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGCATCAATATCGTC 15306542 Query 38502 GCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATT 38561 || |||||||| |||| || | ||| ||||| |||||||| | |||| ||||| Sbjct 15306541 TCCATGAATACCAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCTGCAATTTTCCC 15306482 Query 38562 ATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATA 38621 ||| ||||||||||| || || | || || | ||||||||| |||| | | Sbjct 15306481 ATTTATCTTAAGTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCAAA 15306422 Query 38622 ATCTC 38626 ||||| Sbjct 15306421 ATCTC 15306417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524764860640