Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq5 545 3e-150
seq4 147 3e-30
>seq5
Length=28826359
Score = 545 bits (604), Expect = 3e-150
Identities = 1260/1879 (67%), Gaps = 27/1879 (1%)
Strand=Plus/Minus
Query 64829 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 64888
|||||| | || ||||| || | || || ||||| || |||| ||||||||||||
Sbjct 15308262 CTTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCC 15308203
Query 64889 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 64948
|||||||| || |||| | ||||||| || || | ||| || | ||
Sbjct 15308202 GGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGG 15308143
Query 64949 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 65008
||||||| || | ||| | || ||||||||||| || || || || || || |||||
Sbjct 15308142 CTCTGCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGC 15308083
Query 65009 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 65067
|||||| || | | ||| || ||||||||| | ||||||||||| |||| || |
Sbjct 15308082 CATTTTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCG-AACCT 15308024
Query 65068 CTTCTGGAAG-GTTTGTAT-TCT-GAATGGATCCACCATCTGCCA-TAATCCTATTCTTG 65123
|| |||| |||| || ||| ||||||| || || ||| | | || |||| ||
Sbjct 15308023 TTTGGGGAATAGTTTCAATATCTTGAATGGAGCC-CCTGCTGGAAATTATTTTATTTTTC 15307965
Query 65124 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 65183
|||||||||| |||||| | ||| |||||| | || | | ||| |||| || |||
Sbjct 15307964 ATCTCATCATCCCATAAGTCCAACTCTGTTAAATCCCTCAATAAATGATGATTGACCACT 15307905
Query 65184 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 65243
|||||||| ||||| ||||||| | || |||||||| ||||||| ||||| | ||
Sbjct 15307904 TGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGAT 15307845
Query 65244 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 65303
|| ||||| |||| |||||| ||||| ||||| || ||||| || || || || || |
Sbjct 15307844 TCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAA 15307785
Query 65304 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 65363
|| |||| |||| || | || | ||||| || || ||||| ||| || | ||
Sbjct 15307784 TTCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCCCATAGGTTCGTT 15307725
Query 65364 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 65422
|| ||||||||| || || || | | || |||| ||||
Sbjct 15307724 GGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGAC-TTCCTTCATA 15307666
Query 65423 TGTATCGTATGGTCC--TTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480
|| || ||||| || | || | ||| ||||||||||| || |||| || || ||
Sbjct 15307665 GGTTTCATATGGACCAAATGCT--TGAGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAA 15307608
Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540
||||| ||||| || || | | |||| | ||||| ||| ||| | ||| ||
Sbjct 15307607 TAAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAA 15307548
Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600
| | ||| || ||||| |||| ||||||| ||| |||||||| || | ||| ||
Sbjct 15307547 CGCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTT 15307488
Query 65601 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 65660
||| || | | |||||||| | ||| ||||| || || ||||||||||| || |||
Sbjct 15307487 AAATTGGACTTCTTGGCTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTTGTTAAGA 15307428
Query 65661 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCT 65717
||| || ||| |||| || || || | ||| |||||| | | || ||
Sbjct 15307427 TTTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTTCTGCT 15307368
Query 65718 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 65777
|||| |||||||||| ||| | || || | ||| || || || | ||||| || |
Sbjct 15307367 GTTACGAACATGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAGGTGCT 15307308
Query 65778 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 65837
| || | | || || || || | |||||| || || || || || | ||||||||||
Sbjct 15307307 GAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGA 15307248
Query 65838 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 65897
|| |||||| | || || | ||||||| |||| ||| |||| |||||||||| | ||
Sbjct 15307247 TTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCACTTGC 15307188
Query 65898 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA-TTATAGATTTGTATCTCTTTTC 65956
||||||||||| || ||| | | | || | | | | |||| | | || |||
Sbjct 15307187 GATTCTATAATGGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTCGCACGTC-CTTC 15307129
Query 65957 TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 66016
| || ||| ||| | | ||| || | || |||||||||| | | |||||
Sbjct 15307128 TTGCTCATATTTGACATAGAGTTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAGG 15307069
Query 66017 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 66076
||||| || ||||||||||| ||||| | | | ||| || |||||||| || ||
Sbjct 15307068 ACATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCTCAACACGTTTCATGAAAAG 15307009
Query 66077 ATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 66136
|||||||||||| | ||| ||| | ||| | | || | ||| || ||||| || ||
Sbjct 15307008 ATCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCTCGGTTTTCTTCTTTTCCAGTGTT 15306949
Query 66137 CTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCAT 66196
|||| || || | ||| | | || ||| ||||||| || || || || || || |
Sbjct 15306948 TCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAA 15306889
Query 66197 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 66256
| ||||| | ||| ||||||||||| | |||| ||| |||||| |||||||
Sbjct 15306888 GGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGAGCCACATTATTAAAAACTCT 15306829
Query 66257 CAACATTGGAA-TAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTG 66315
|||||||||| |||| ||||| || ||||| || || || | || | | || | |
Sbjct 15306828 TAACATTGGAACTAAT-CCATTCGACGTACCGTTCGTTCCACATATTGAAGTGCCTTTAG 15306770
Query 66316 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 66375
||||||| | | | ||| || ||||| ||||| ||| || || | ||| |||
Sbjct 15306769 CACGAAT-GCAATGAACATTAGTCCGATTCCACCTGCTGATTTGGAAATCAGTGCACATT 15306711
Query 66376 GTTTTAACGTATCATAGATGCCCTCTATACTATC---ATCCATCATGTTAAGTAGAAAAC 66432
||| | | | | | || || || || ||| || ||| ||| || |||||||
Sbjct 15306710 GTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCAT--TGTCAA-AAGAAAAC 15306654
Query 66433 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 66492
| |||| ||| | ||| | || | ||| ||| | || || || || |||||||
Sbjct 15306653 ACGAGGACAATTGAGGTCGATTTGTAGCAGCAGCAAAAAGCGTTGGCGAGGCATGCGTAA 15306594
Query 66493 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 66552
| || |||||| ||||| ||||| || || | || | || ||||| | |||||
Sbjct 15306593 AGTATCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGCATCAATATCGTCTCCATGAA 15306534
Query 66553 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 66612
| || | ||||| ||||| | |||||| || || | ||| | || || ||||| |
Sbjct 15306533 TACCAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCTGCAATTTTCCCATTTATCT 15306474
Query 66613 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 66672
| | | ||||| || | || ||||| ||||||||||| || ||| ||||| |
Sbjct 15306473 TAAGTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCAAAATCTCGGT 15306414
Query 66673 CGTAAATAATAACCGAGTT 66691
| ||||||||| | |||||
Sbjct 15306413 CATAAATAATAGCAGAGTT 15306395
>seq4
Length=20862834
Score = 147 bits (162), Expect = 3e-30
Identities = 353/532 (66%), Gaps = 3/532 (1%)
Strand=Plus/Plus
Query 36161 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 36220
|| || |||||||| ||||| ||||| | || | |||||||| || || || |||
Sbjct 15862742 GCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCG 15862801
Query 36221 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 36280
||||| || |||||||| || |||||||| || || ||||| || |||||| |||
Sbjct 15862802 GGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTAAAGAAGATT 15862861
Query 36281 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CACTGTCATG--TATC 36337
||||| || |||||||||||||||| | ||| || | || | | || | ||||
Sbjct 15862862 CCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 15862921
Query 36338 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 36397
|| ||||| || ||||| |||||| ||||| ||||| |||||||| ||
Sbjct 15862922 CAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAAC 15862981
Query 36398 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 36457
| |||| || | || | || || ||||| | | || ||||| ||
Sbjct 15862982 AAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 15863041
Query 36458 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 36517
|| || | || || ||||| || || || |||||||| || | ||||| || |||||
Sbjct 15863042 GAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCCGTGATCTGC 15863101
Query 36518 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 36577
|| || || ||| || || | | ||| || || || || ||||| ||| || ||
Sbjct 15863102 ACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAG 15863161
Query 36578 AACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTG 36637
|| || | ||||| ||||| || ||||| || || ||| || |
Sbjct 15863162 AAGGCTAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGTC 15863221
Query 36638 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689
|| || |||| |||||| |||||||| ||||| || || ||||| ||||
Sbjct 15863222 GCGTCCTTCGATAGATCCACCTCTTCCACGGTCCAGAAGGAGGCCTCCGCCT 15863273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658172750637040
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