Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq5 168 6e-37 >seq5 Length=28826359 Score = 168 bits (186), Expect = 6e-37 Identities = 235/330 (71%), Gaps = 6/330 (2%) Strand=Plus/Plus Query 20877 ATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACG 20936 || |||||| |||||||| ||||| | | |||||| | ||| |||||||| Sbjct 2480142 ATGTTCAGCTTTGGAAACGGCCGCGGCTTGCGTTTCAGCTGCTCCTTCAGTGGATCAACA 2480201 Query 20937 TGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCC 20996 ||||| || || || ||||| |||| |||||| | |||||| |||| ||| ||| Sbjct 2480202 TGGTTAAGATACACATGAGCGTCGCCCATGGTGTGGATAAAGTCGCCCGTCTTCAAGCCA 2480261 Query 20997 GTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCG 21056 || || || || |||| || ||||| ||||||||| |||||||| || || || || Sbjct 2480262 GTTACATGGGCTATCATGTAGGTCAGCAGGGCGTAGGATGCGATGTTGAATGGCACGCCA 2480321 Query 21057 AGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC------ 21110 ||||||||||||||| | ||| |||||||||||||||||||| || || | | Sbjct 2480322 AGGCCCATGTCGGCGCTGCGCTGATACAGCTGGCAGGACAGCTCTCCGCGGGTCTGCGAG 2480381 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGG 21170 ||||| ||||| || | || || || ||||| ||||| | | |||| ||| Sbjct 2480382 ACGTAGAACTGTGCCAGACAATGGCAGGGCGGGAGTGCCATTTTGGGTATGTCCAGGGGA 2480441 Query 21171 TTCCACGCGCACATAACGATGCGCCGATCG 21200 ||||| || |||| | |||||| |||||| Sbjct 2480442 TTCCATGCAGACATGATGATGCGACGATCG 2480471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427775968718880