Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq4 100 2e-16 seq3 89.7 4e-13 >seq4 Length=20862834 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 ||||||||||| || ||||| || | ||| || ||||| | || || |||||| Sbjct 15862881 GCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGCGGCAGCTTTGCCTCGATCTTTTGGCTG 15862822 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||| ||| |||||||| || || | || ||||||||| |||| |||||||||| Sbjct 15862821 AAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGACGAA 15862762 Query 22870 GGTCTACACTGTGACTTTGC 22889 ||||| ||||| |||||||| Sbjct 15862761 GGTCTTCACTGCGACTTTGC 15862742 >seq3 Length=33007066 Score = 89.7 bits (98), Expect = 4e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 33565 CGCATACCAGAGATGGGCGACAAGTTTGCAT-CGTTCACGGCCCAGAAGGGCACGTGCGG 33623 ||||| ||| |||| |||||||||||||| | | |||||| |||||||| ||||| || Sbjct 18977883 CGCATTCCACAGATCGGCGACAAGTTTGCCTCCCGTCACGG-ACAGAAGGGAACGTGTGG 18977941 Query 33624 CATGATGTACGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGT 33683 || ||| ||| ||||||||| ||||| ||| || ||| ||| || | | Sbjct 18977942 GATCCAGTATCGGCAGGAGGACATGCCCTTCACCTGCGAGGGACTGGCCCCTGATATCAT 18978001 Query 33684 CATCAACCCGCATGCGTTCCCCTCGCGCATGAC 33716 |||||| || ||||| ||||||| || ||||| Sbjct 18978002 CATCAATCCCCATGCCATCCCCTCTCGTATGAC 18978034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356233573950418