Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5 113 4e-20 seq2 87.8 2e-12 >seq5 Length=28826359 Score = 113 bits (124), Expect = 4e-20 Identities = 693/1098 (63%), Gaps = 28/1098 (3%) Strand=Plus/Minus Query 152719 CGACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCT 152778 |||| |||||||| | ||||| || || || || ||||||||||| || || | Sbjct 15308257 CGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCCGGTTT 15308198 Query 152779 TGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGG-TCG 152837 | || ||| || |||| | | | || | || | || || || ||| ||| || Sbjct 15308197 TTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTT-CCGTAGTTGGGCTCT 15308139 Query 152838 GCCATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATG 152897 || | || || |||||||| |||||||||||||||||||| |||||||| || ||||| Sbjct 15308138 GCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATT 15308079 Query 152898 TCGATCATGAATTTTCCGTTGTTGTGCCAGCATTCCCAGATTGTCATGTACAGCTTTTTA 152957 | || || ||||| | || | |||||| | || | || || | | Sbjct 15308078 TTAATTGTGGATTTTAC--TG-------AAATTTCCCATACAGTTTTATAAAGATCGCGA 15308028 Query 152958 ATGTTGTCGGGAA---TTTC-ATCTATGGAAGCTATCGATCCTCGGTTTGCCATGATCCT 153013 | || | ||||| |||| || | | || || || || | | | | || || | Sbjct 15308027 ACCTTTTGGGGAATAGTTTCAATATCTTGA----ATGGAGCCCCTGCTGGAAATTATTTT 15307972 Query 153014 TTTCCGCATACTACTTGT-GTACAGATTCAATGCGATTAGATCATCGACCAAGTAGCGGT 153072 || ||| || | | | | | ||| | ||| ||| | || | | | Sbjct 15307971 ATTTTTCAT-CTCATCATCCCATAAGTCCAACTCTGTTAAATCCCTCAATAAATGATGAT 15307913 Query 153073 TGACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTACTGTGAAACGGTT 153132 |||| ||||||||||| || || ||||| |||||| | | | ||| || | | |||| Sbjct 15307912 TGACCACTTGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTT 15307853 Query 153133 CAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAA 153192 | || || ||||| ||| | |||||||| || | || || ||||| ||| || | Sbjct 15307852 CGAATGATTCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTA 15307793 Query 153193 GCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATC-TTCAATTGTGACCAGTCCCAT 153251 ||||||||| | | |||||| |||| ||| || || |||| | ||| |||||| Sbjct 15307792 ACAACGAATTCCTAATTCCGTGCTTTTTAATG-TCTTCTTTCAGGCTTTGCCAATCCCAT 15307734 Query 153252 AACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGCTA 153311 | || || | || ||||| ||| ||||| | || |||| ||| | || Sbjct 15307733 AGGTTCGTTGGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACTT 15307674 Query 153312 CCGGCAAACGTGCTATACGG-CTCACTGTCAGACGCCAGTTTCAAACTGGCATCGAGCGC 153370 || || | || ||| || | | || || || |||| |||| || || || || Sbjct 15307673 CCTTCATAGGTTTCATATGGACCAAATGCTTGA-GCAAGTTCACAACTAGCTTCTAGAGC 15307615 Query 153371 GGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGTA 153430 || ||| | ||||| | || |||| ||| | | | |||| | ||||| | || Sbjct 15307614 TCCAAAATAAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATA 15307555 Query 153431 CGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACG 153490 || | |||| | | || || || || | ||||||||| || || || || ||||| Sbjct 15307554 GGGAAAACGCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACG 15307495 Query 153491 ATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTTT 153550 ||| | | ||| || || || || || | ||| || | ||| ||| |||||||| Sbjct 15307494 ATGCCTTAAATTGGACTTCTTGGCTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTT 15307435 Query 153551 ATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACGTTCC 153610 || | | | | | ||| ||| || | || || |||||| ||||| Sbjct 15307434 GTTAAGATTTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTT 15307375 Query 153611 AT-TAATGATA--TATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTC 153667 | | || || | |||| | || || || || || ||||| || || | || || Sbjct 15307374 TTCTGCTGTTACGAACATGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATC 15307315 Query 153668 GGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATT 153727 || || | || | || ||||| | ||| ||||| |||||||| || ||| ||| Sbjct 15307314 AGGTGCTGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATT 15307255 Query 153728 ACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTC 153787 ||||||||| || | || || | ||||| | ||||||||||| | || ||||| Sbjct 15307254 TTGTTGATTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTC 15307195 Query 153788 GGCTTGAATTTCTATAAT 153805 |||| ||||||||| Sbjct 15307194 CACTTGCGATTCTATAAT 15307177 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 ||||| || | || ||||| || |||||||||||||| || ||| | ||||| Sbjct 15755909 ACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCC 15755968 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | || || ||||| |||||| ||| || ||||| ||||| || ||||||||||| | Sbjct 15755969 AATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGG 15756028 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||| | | ||| | || || | || || ||||||| || | |||||| Sbjct 15756029 ATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTTATGGTCTTG 15756088 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATAGCTTA 139770 || || | || ||||| || || ||||| | ||| Sbjct 15756089 CCCGTTAGGGTCTTTACAAAGATCTGCATGGTTTA 15756123 >seq2 Length=30136903 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||||| || || || | || ||||| || || ||||| || || Sbjct 19092324 CCGCCACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 19092383 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || ||||| |||| ||||| ||||| || || || Sbjct 19092384 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGG 19092443 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | ||||||| ||||||||| Sbjct 19092444 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACC 19092503 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || || ||||||| || || |||||||| |||||| Sbjct 19092504 TCCAGGGTGATGGTTTTTCCGGTCAGAGTCTTCACGAATATCTGCATA 19092551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063962795200