Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5 581 5e-161 seq4 147 3e-30 >seq5 Length=28826359 Score = 581 bits (644), Expect = 5e-161 Identities = 1265/1875 (67%), Gaps = 19/1875 (1%) Strand=Plus/Minus Query 78708 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767 |||||| | || ||||| || | || || ||||| || |||| |||||||||||| Sbjct 15308262 CTTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCC 15308203 Query 78768 CGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGG 78827 |||||||| || |||| | | ||||| || || | ||| || | || Sbjct 15308202 GGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGG 15308143 Query 78828 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 78887 ||||||| || | ||| | || ||||||||||| || || || || || || ||||| Sbjct 15308142 CTCTGCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGC 15308083 Query 78888 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 78946 |||||| || | | ||| || ||||||||| | ||||||||||| |||| || | Sbjct 15308082 CATTTTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCG-AACCT 15308024 Query 78947 CTTCTGGAAG-GTTTGTAT-TCT-GAATGGATCCACCATCTGCCA-TAATCCTATTCTTG 79002 || |||| |||| || ||| ||||||| || || ||| | | || |||| || Sbjct 15308023 TTTGGGGAATAGTTTCAATATCTTGAATGGAGCC-CCTGCTGGAAATTATTTTATTTTTC 15307965 Query 79003 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 79062 ||||| |||| |||||| | ||| |||||| | || | | ||| |||| || ||| Sbjct 15307964 ATCTCATCATCCCATAAGTCCAACTCTGTTAAATCCCTCAATAAATGATGATTGACCACT 15307905 Query 79063 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGAT 79122 |||||||| ||||| ||||||| | || |||||||| ||||||||||||| | ||| Sbjct 15307904 TGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGAT 15307845 Query 79123 TCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA 79182 || ||||| |||| |||||| ||||| ||||| || ||||| || || || || || | Sbjct 15307844 TCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAA 15307785 Query 79183 TTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGAC 79242 || |||| |||| | | || | ||||| || || ||||||||| || | | Sbjct 15307784 TTCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCCCATAGGTTCGTT 15307725 Query 79243 GGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGA--TCCTGTGT 79300 || || ||| | ||||||||||||||| || || || | | || |||| | Sbjct 15307724 GGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTAC--AGGACTTCCTTCAT 15307667 Query 79301 ATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAAT 79360 | |||||||| || || || || | ||||||||| || |||| ||||| ||| Sbjct 15307666 AGGTTTCATATGGACCAAATGCTTGAGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAAT 15307607 Query 79361 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAAT 79420 |||| ||||| || || | | || | | |||||| ||| ||| | ||| || Sbjct 15307606 AAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAAC 15307547 Query 79421 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 79480 | | ||| || ||||| |||| ||||||| ||| |||||||| || | ||| || Sbjct 15307546 GCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTTA 15307487 Query 79481 TATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 79540 ||| || | | |||||||| | ||| ||||| || || ||||||||||| || |||| Sbjct 15307486 AATTGGACTTCTTGGCTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTTGTTAAGAT 15307427 Query 79541 TCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCGTCCATCTA 79597 | || | | |||| || || |||| ||| |||||| | | | | || Sbjct 15307426 TTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTTCTGCTG 15307367 Query 79598 TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 79657 |||| |||||||||| || | || || | ||| || || || | ||||| || | | Sbjct 15307366 TTACGAACATGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAGGTGCTG 15307307 Query 79658 CATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGAT 79717 || | | ||||| || || | ||||| || ||||| || || | ||||||||||| Sbjct 15307306 AGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGAT 15307247 Query 79718 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAG 79777 | |||||| | || || | ||||||| |||| ||| | || |||||||||| | || | Sbjct 15307246 TGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCACTTGCG 15307187 Query 79778 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA-TTATAGACTTGTATCTCTTTTCT 79836 |||||||||| || ||| | | | || | | | | || | | | || |||| Sbjct 15307186 ATTCTATAATGGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTCGCACGTC-CTTCT 15307128 Query 79837 CTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGA 79896 || |||| ||| | | ||| || | || ||||||||||| | | |||||| Sbjct 15307127 TGCTCATATTTGACATAGAGTTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAGGA 15307068 Query 79897 CATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGA 79956 |||| | ||||||||||| ||||| | ||| ||| || |||||||| || ||| Sbjct 15307067 CATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCTCAACACGTTTCATGAAAAGA 15307008 Query 79957 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 80016 ||||||||||| | ||| ||| ||||| | | || | || || ||||| || || Sbjct 15307007 TCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCTCGGTTTTCTTCTTTTCCAGTGTTT 15306948 Query 80017 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 80076 |||| || || | ||| | | || ||| |||||||| || || || || || || | Sbjct 15306947 CTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAAG 15306888 Query 80077 ACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 80136 | || |||| ||| ||||||||||| | |||| ||| |||||| ||||||| Sbjct 15306887 GCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGAGCCACATTATTAAAAACTCTT 15306828 Query 80137 AACATTGGAA-TAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGC 80195 |||||||||| |||| ||||| || ||||| || || || | || | | || | || Sbjct 15306827 AACATTGGAACTAAT-CCATTCGACGTACCGTTCGTTCCACATATTGAAGTGCCTTTAGC 15306769 Query 80196 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 80255 |||||| | | | ||| || ||||| ||||| ||| || || | ||| ||| | Sbjct 15306768 ACGAAT-GCAATGAACATTAGTCCGATTCCACCTGCTGATTTGGAAATCAGTGCACATTG 15306710 Query 80256 TTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 || | | | | | || || || || ||| | |||| | | |||||||| Sbjct 15306709 TTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCATTGTCAAAAGAAAACACGA 15306650 Query 80316 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 80375 |||| ||| | ||| | || | ||| ||| | || || || || |||||||| | Sbjct 15306649 GGACAATTGAGGTCGATTTGTAGCAGCAGCAAAAAGCGTTGGCGAGGCATGCGTAAAGTA 15306590 Query 80376 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCC 80435 | |||||||||||| ||||| || || | || | || ||||| | |||||| || Sbjct 15306589 TCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGCATCAATATCGTCTCCATGAATACC 15306530 Query 80436 TACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAA 80495 | ||||| ||||| | |||||| || || | ||| | || || |||||| || | Sbjct 15306529 AAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCTGCAATTTTCCCATTTATCTTAAG 15306470 Query 80496 CAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555 | || || || | || ||||| ||||||||||| || ||| ||||| || || Sbjct 15306469 TAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCAAAATCTCGGTCATA 15306410 Query 80556 AATAATAACCGAGTT 80570 ||||||| | ||||| Sbjct 15306409 AATAATAGCAGAGTT 15306395 >seq4 Length=20862834 Score = 147 bits (162), Expect = 3e-30 Identities = 353/532 (66%), Gaps = 3/532 (1%) Strand=Plus/Plus Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 || || |||||||| ||||| ||||| | || || |||||||| || || || ||| Sbjct 15862742 GCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCG 15862801 Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATT 50082 ||||| || |||||||| || |||||||| || || ||||| || |||||||||| Sbjct 15862802 GGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTAAAGAAGATT 15862861 Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-CGCTGTCATG--TATC 50139 ||||| || || |||||||||| || | ||| || | ||| || | || | |||| Sbjct 15862862 CCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 15862921 Query 50140 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199 || ||||| || ||||| |||||| ||||| || || || ||||| || Sbjct 15862922 CAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAAC 15862981 Query 50200 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259 | |||| || | || | || || || || | | || ||||| || Sbjct 15862982 AAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 15863041 Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319 || || | || || ||||| ||||| || |||||||| || | ||||| || |||||| Sbjct 15863042 GAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCCGTGATCTGC 15863101 Query 50320 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379 || || || ||| || || | | ||| || || || || ||||| ||| || || Sbjct 15863102 ACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAG 15863161 Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG 50439 || || | ||||| ||||| | |||||| || || ||| || | Sbjct 15863162 AAGGCTAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGTC 15863221 Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 || || |||| ||| || |||||||| ||||| || || ||||| |||| Sbjct 15863222 GCGTCCTTCGATAGATCCACCTCTTCCACGGTCCAGAAGGAGGCCTCCGCCT 15863273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268746129840