Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5 515 5e-141 seq4 123 3e-23 >seq5 Length=28826359 Score = 515 bits (570), Expect = 5e-141 Identities = 1257/1888 (67%), Gaps = 33/1888 (2%) Strand=Plus/Minus Query 70785 TTTTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTA 70844 || || |||||| | ||||| || || | || || | ||| || |||| |||||| Sbjct 15308268 TTGTTTCTTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTA 15308209 Query 70845 CATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATA 70904 ||| || |||||||| || |||| | ||||||| || || | ||| || Sbjct 15308208 CATTCCGGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTA 15308149 Query 70905 GCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTC 70964 | | || || |||| ||||| ||| | ||||||||||||||| || || || || || || Sbjct 15308148 GTTGGGCTCTGCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATC 15308089 Query 70965 TGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCT 71023 ||||||||||| || | | ||| || ||||||||| | ||||||||||| |||| Sbjct 15308088 AGCAGCCATTTTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCG 15308029 Query 71024 TAATATCTTCTGGAAG-GTTTGTAT-TCT-GAATGGATCCACCATCTGCAA-TAATCCTA 71079 || | || |||| |||| || ||| ||||||| || || ||| || | || || Sbjct 15308028 -AACCTTTTGGGGAATAGTTTCAATATCTTGAATGGAGCC-CCTGCTGGAAATTATTTTA 15307971 Query 71080 TTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 71139 ||||| ||||| |||| |||||| | ||| |||||| | || | | |||| |||| Sbjct 15307970 TTTTTCATCTCATCATCCCATAAGTCCAACTCTGTTAAATCCCTCAATAAATGATGATTG 15307911 Query 71140 ACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCC 71199 || ||||||||||| ||||| ||||||| | || |||||||| ||||||| ||||| Sbjct 15307910 ACCACTTGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCG 15307851 Query 71200 ACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 71259 | ||| || ||||| |||| |||||| ||||| ||||| || ||||| || || || || Sbjct 15307850 AATGATTCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAAC 15307791 Query 71260 AGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGA 71319 | ||| |||| || || | || | ||||| || || ||||| ||| || Sbjct 15307790 AACGAATTCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCCCATAGG 15307731 Query 71320 TCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGA--TC 71377 | || ||| || || || || | | || || Sbjct 15307730 TTCGTTGGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTAC--AGGACTTC 15307673 Query 71378 CTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTC 71437 || |||| || || ||||| || | || || ||||||||||| || |||| |||| Sbjct 15307672 CTTCATAGGTTTCATATGGACCAAATGCTTGAGCAAGTTCACAACTAGCTTCTAGAGCTC 15307613 Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATG 71497 || ||||||| ||||| || || | | || | | ||||| ||| ||| | | Sbjct 15307612 CAAAATAAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGG 15307553 Query 71498 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGT 71557 || || | | ||| || ||||| |||| ||||||| || |||||||| || | | Sbjct 15307552 GAAAACGCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGAT 15307493 Query 71558 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 71617 | || ||| || | | |||||||| | ||| ||||| || || ||||||||||| | Sbjct 15307492 GCCTTAAATTGGACTTCTTGGCTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTTGT 15307433 Query 71618 TGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCC 71674 | |||||| || | | |||| || || |||| ||| |||||| | | | Sbjct 15307432 TAAGATTTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTT 15307373 Query 71675 CATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 71734 | || |||| |||| ||||| || | || || | ||| || || || | ||||| || Sbjct 15307372 CTGCTGTTACGAACATGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAG 15307313 Query 71735 CATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 71794 | | || | | |||||| || || | |||||| || || || || || | ||||| Sbjct 15307312 GTGCTGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTT 15307253 Query 71795 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAA 71854 ||||||| |||||| | || || | ||||||| |||| || | || |||||||||| | Sbjct 15307252 GTTGATTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCA 15307193 Query 71855 TCTGAGATTCTATAATCGCTTTCCA-GACGACTCG--AGCCTTTATTATATTCTTGTATC 71911 || ||||||||||| || ||| | | || | || | || |||| | | Sbjct 15307192 CTTGCGATTCTATAATGGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTC--GCACG 15307135 Query 71912 TCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTA 71971 || |||| || |||| ||| | | ||| || | || |||||| ||| | | Sbjct 15307134 TC-CTTCTTGCTCATATTTGACATAGAGTTCTTCAAATTTTTCGCCCCAAACATCTTGAA 15307076 Query 71972 ATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCA 72031 |||||||||| || ||||||||||||||||| | ||| | | || ||||||| Sbjct 15307075 GGCCAGGACATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCTCAACACGTTTCA 15307016 Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091 | || |||||||||||||| | ||| ||| ||||| | | || | || || |||| Sbjct 15307015 TGAAAAGATCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCTCGGTTTTCTTCTTTTC 15306956 Query 72092 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 72151 | || || |||| || || | ||| | | || ||| |||||||| || || || || | Sbjct 15306955 CAGTGTTTCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAA 15306896 Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211 | || | | || || | ||| ||||||||||| | |||| ||| |||||| Sbjct 15306895 TAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGAGCCACATTATTAA 15306836 Query 72212 AAACTCTCAACATTGGAA-TAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 72270 ||||||| |||||||||| |||| ||||| || | ||| || || || | || | | Sbjct 15306835 AAACTCTTAACATTGGAACTAAT-CCATTCGACGTACCGTTCGTTCCACATATTGAAGTG 15306777 Query 72271 CCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 72328 || | |||||||| | || || ||| || ||||| ||||| ||| || || | Sbjct 15306776 CCTTTAGCACGAATGCAATGAACAT---TAGTCCGATTCCACCTGCTGATTTGGAAATCA 15306720 Query 72329 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC---ATCCATCATGTTAA 72385 ||| ||| ||| | | | | | || || || || ||| || ||| ||| || Sbjct 15306719 GTGCACATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCAT--TGTCAA 15306662 Query 72386 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 72445 |||||||| |||| ||| | ||| | || | ||| ||| | || || || | Sbjct 15306661 -AAGAAAACACGAGGACAATTGAGGTCGATTTGTAGCAGCAGCAAAAAGCGTTGGCGAGG 15306603 Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCC 72505 | |||||||| || |||||||||||| ||||| || || | || | || ||||| Sbjct 15306602 CATGCGTAAAGTATCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGCATCAATATCGT 15306543 Query 72506 ATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGT 72565 | ||| || || | ||||| ||||| | ||| || || || | ||| | || || Sbjct 15306542 CTCCATGAATACCAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCTGCAATTTTCC 15306483 Query 72566 TATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 72625 |||||| || | | ||||| || | || ||||| ||||||||||| || || Sbjct 15306482 CATTTATCTTAAGTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCAA 15306423 Query 72626 AGTCTCGTTCGTAAATAATAACCGAATT 72653 | ||||| || ||||||||| | || || Sbjct 15306422 AATCTCGGTCATAAATAATAGCAGAGTT 15306395 >seq4 Length=20862834 Score = 123 bits (136), Expect = 3e-23 Identities = 289/434 (67%), Gaps = 3/434 (1%) Strand=Plus/Plus Query 42068 GCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 42127 || || |||||||| ||||| || || | || | |||||||| || || || ||| Sbjct 15862742 GCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCG 15862801 Query 42128 GGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATT 42187 ||||| || |||||||| || |||||||| || || ||||| || |||||||||| Sbjct 15862802 GGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTAAAGAAGATT 15862861 Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CACTGTCATG--TATC 42244 ||||| || |||||||||||||||| | ||| || | || | | || | |||| Sbjct 15862862 CCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 15862921 Query 42245 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 42304 || ||||| || ||||| |||||| ||||| || || || ||||| || Sbjct 15862922 CAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAAC 15862981 Query 42305 AGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCT 42364 | |||| || | || | || || || || | | || ||||| || Sbjct 15862982 AAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 15863041 Query 42365 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGT 42424 || || | || || ||||| ||||| || |||||||| || | ||||| || | ||| Sbjct 15863042 GAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCCGTGATCTGC 15863101 Query 42425 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAA 42484 || || || ||| || || | | ||| ||||| || || ||||| ||| || || Sbjct 15863102 ACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAG 15863161 Query 42485 AACGCCAATACATG 42498 || || | ||||| Sbjct 15863162 AAGGCTAGCACATG 15863175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139149664560