Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq5 161 1e-34 >seq5 Length=28826359 Score = 161 bits (178), Expect = 1e-34 Identities = 942/1491 (63%), Gaps = 51/1491 (3%) Strand=Plus/Minus Query 156142 GACGGTAAATTGC--TGCGAATTGGCCGCCGGAAGTGTGCGAAAATAGTACATGCCGGTT 156199 ||| |||||||| |||| ||||| || || |||||| ||||||||||| |||||| Sbjct 15308256 GACAGTAAATTGTATTGCG--TTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCCGGTT 15308199 Query 156200 TTGAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATTTTAGGCAAAGTAGGGTT- 156258 || || || ||||| | | | || | || | || ||| | ||| ||| | Sbjct 15308198 TTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTC-CGTAGTTGGGCTC 15308140 Query 156259 TGCCATGTACACGTTGAACGATTGACTTTGATCGATAAATGCTCCCCTGTCTGCTGCCAT 156318 ||| | || || || ||||| ||||||||||| |||||||| || || || || ||||| Sbjct 15308139 TGCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCAT 15308080 Query 156319 TTCAATCATATATTTTCCATTGTTCTCCCAAATTTCCCAGATTGTCATGTACAGCTTTTT 156378 || ||| | ||||| | || |||||||||| | || | || || | Sbjct 15308079 TTTAATTGTGGATTTTAC--TG-------AAATTTCCCATACAGTTTTATAAAGATCGCG 15308029 Query 156379 TAGATTGTCGGGAATTTTGGCGATAGAAGCTATCGATCCTCTGTTTGCCATGATTGTTTT 156438 | || | |||||| | | ||| || || || ||| | | || ||| | || Sbjct 15308028 AACCTTTTGGGGAATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAAATTATTTTATT 15307969 Query 156439 TCGCATACTAT--TTGTATAGAGATTTAATTTGATTAGATCATCGACCAAGTAGCGGTTG 156496 | ||| || | ||| || | | || ||| ||| | || | | ||| Sbjct 15307968 TTTCATCTCATCATCCCATA-AGTCCAACTCTG-TTAAATCCCTCAATAAATGATGATTG 15307911 Query 156497 ACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTGTGAAACGGTTCA 156556 || ||||||||||| || || || || |||||| | | | ||| || | | ||||| Sbjct 15307910 ACCACTTGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCG 15307851 Query 156557 AATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGC 156616 ||||| ||||| || | |||||||| || | || || ||||| ||| || | | Sbjct 15307850 AATGATTCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAAC 15307791 Query 156617 AATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAA-CTGTGACCAGTCCCATAA 156675 || ||||| | | ||||| |||| || | | ||||| || || ||| ||||||| Sbjct 15307790 AACGAATTCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTG-CCAATCCCATAG 15307732 Query 156676 CGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTACC 156735 || || ||| ||||| ||| ||||| | ||||||| ||| | || || Sbjct 15307731 GTTCGTTGGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACTTCC 15307672 Query 156736 GGCAAACGTGCTATAAGGCTCACTAACAGAT---GCCAGTTCGTAACTGGCCTCGAGCGC 156792 || | || ||| || || || | | || ||||| |||| || || || || Sbjct 15307671 TTCATAGGTTTCATATGG---ACCAAATGCTTGAGCAAGTTCACAACTAGCTTCTAGAGC 15307615 Query 156793 AGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACGTA 156852 || ||| | |||||| ||||||| || || ||| |||| | ||||| | || Sbjct 15307614 TCCAAAATAAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATA 15307555 Query 156853 CGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACG 156912 || | |||| | || || || || || | ||||||||| || || ||||| ||||| Sbjct 15307554 GGGAAAACGCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACG 15307495 Query 156913 ATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTT 156972 ||| | | ||| || || || || | | |||||| | ||| || |||||||| Sbjct 15307494 ATGCCTTAAATTGGACTTCTTGGCTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTT 15307435 Query 156973 ATTCAAACTATCCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGTATC 157032 || | | | | | ||| |||| || | ||| || |||||| | || | Sbjct 15307434 GTTAAGATTTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTT 15307375 Query 157033 AT-TATTGATAT--ATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTC 157089 | | || || | | || | || || || |||| ||| || || || | || || Sbjct 15307374 TTCTGCTGTTACGAACATGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATC 15307315 Query 157090 GGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATT 157149 || || | || | || ||||| | ||| ||||| |||||||| || || ||| Sbjct 15307314 AGGTGCTGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATT 15307255 Query 157150 ACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTC 157209 ||||||||| || | ||||| | ||||| | | |||||| || | || ||||| Sbjct 15307254 TTGTTGATTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTC 15307195 Query 157210 GGCTTGAATTTCTATGATGTTGCGCATTAATGTAACCGCGGGCATT---TGCTCG---CG 157263 |||| |||||| ||| | ||| | | |||| | || ||| || Sbjct 15307194 CACTTGCGATTCTATAATGGCAAACCATAAAG----CCTGGGCTTCCACTGTTCGATTCG 15307139 Query 157264 AAACTGGCCTTTATCCTCGTAATGTTTGTACCAG---TATTCAAAGTCATCACCATACGT 157320 | | |||| | ||| || |||| || | |||||| | || || | Sbjct 15307138 CACGT--CCTTCTTGCTCATA---TTTGACATAGAGTTCTTCAAATTTTTCGCCCCAAAC 15307084 Query 157321 ATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAAC 157380 ||| | || |||||| | | |||||||| |||||||| | | ||| | ||||| Sbjct 15307083 ATCTTGAAGGCCAGGACATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCTCAAC 15307024 Query 157381 GCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTC 157440 |||||||| || | ||| |||| ||||||||||| | | |||||| ||| | | || Sbjct 15307023 ACGTTTCATGAAAAGATCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCTCGGTTTTC 15306964 Query 157441 TTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTC 157500 ||| | ||| |||||| | || ||||| || | || || ||||||| || || Sbjct 15306963 TTCTTTTCCAGTGTTTCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTC 15306904 Query 157501 AACGTACACTGCTTGGGCTCCTTTTCGCTTGCCACCT---TGATCCACGTGACGCACCAT 157557 | || | || ||| || || || |||||| ||||| || | || ||| Sbjct 15306903 TAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGAGCCAC 15306844 Query 157558 ATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGT 157608 |||||||||||||| | |||||| | | ||| | | || |||||||| Sbjct 15306843 ATTATTAAAAACTCTTAACATTGGAACTAATCCATTCGACGTACCGTTCGT 15306793 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 |||||||| | || || || || || ||||| ||||| || ||| | ||||| Sbjct 15755909 ACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCC 15755968 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||| || ||||| |||||| ||| || ||||| ||||| || ||||||||||| Sbjct 15755969 AATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGG 15756028 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | ||| | || |||| ||||| || |||| ||| | |||||| Sbjct 15756029 ATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTTATGGTCTTG 15756088 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATAGCTTA 143190 || || | || ||||| || || ||||| | ||| Sbjct 15756089 CCCGTTAGGGTCTTTACAAAGATCTGCATGGTTTA 15756123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014361973920