Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq4 255 9e-63
seq1 224 1e-53
seq5 199 6e-46
seq2 95.1 2e-14
>seq4
Length=20862834
Score = 255 bits (282), Expect = 9e-63
Identities = 578/862 (67%), Gaps = 38/862 (4%)
Strand=Plus/Minus
Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097
|||| |||||||||| ||||| || |||||||| ||||| || |||||| | || |
Sbjct 15863273 AGGCGGAGGCCTCCTTCTGGACCGTGGAAGAGGTGGATCTATCGAAGGACGCGACGGACT 15863214
Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157
||| | ||| | ||||| | ||||| | ||||| || || | | |||||||| |
Sbjct 15863213 GGG---CCCGTCTCACTGACAACGAGCGCTACTTTATCTCCCATGTGCTAGCCTTCTTCG 15863157
Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217
| | ||| || || || || ||||| |||||| | || || ||| ||| || |
Sbjct 15863156 CTGCCTCGGACGGCATTGTTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGA 15863097
Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277
| | |||| ||||| ||||| ||||| || || ||||| |||||||| || |
Sbjct 15863096 TCACGGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGA 15863037
Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA---CGTAAACACATGCTCT 125334
||||| || ||||||| ||||| || || ||||| || | || || ||
Sbjct 15863036 TGTACAGCGTGCTCATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTC- 15862978
Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGG 125390
|| || || || || ||||| || ||||| ||||| | |||| ||
Sbjct 15862977 --AATGCTATTGAGACCATGCCGGCT----GTAAAGCGCAAGGCGGACTGGGCCATGTCC 15862924
Query 125391 TGGATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTA 125447
||||| || | || || | || ||||| | | | || || || |||||
Sbjct 15862923 TGGAT--ATC-CTCGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTG 15862867
Query 125448 GAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507
|| || ||||||||| || || ||||| | ||||||||||| |||||||| || |||
Sbjct 15862866 GAAGGAATCTTCTTTAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTC 15862807
Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567
|||||||| ||||| | |||||| | || || || ||||| || || ||||| |||
Sbjct 15862806 ATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGAC 15862747
Query 125568 TTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC---AGCGATGAA 125624
||||| | || ||| || || |||| ||||||| | |||| ||
Sbjct 15862746 TTTGCGGTGCTCATGTATC---ACCATCT--------AGTGCAGCGGCCCAAGCGG-GAG 15862699
Query 125625 AAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCC 125684
||||| | || | | ||||| ||| || || || ||||| || || ||| ||
Sbjct 15862698 CGCATCATCGAGATCATCAGGGATGCTGTGGAAATCGAGCAGGAGTTCCTCACTGAAGCC 15862639
Query 125685 CTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTG 125744
|| || |||| |||||||||||||||| || |||| | ||||||| ||||| |||
Sbjct 15862638 CTGCCCGTCAATTTGATTGGCATGAACTGTGTTCTCATGTCCCAGTACATCGAGTTCGTG 15862579
Query 125745 GCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTT 125804
|| ||||| || || ||| | || | ||||| |||||| | |||||||| ||
Sbjct 15862578 GCCGATCGGCTGCTAGGGGAGCTCGGTGTGGGTAAGATCTACAACACTAAGAATCCTTTC 15862519
Query 125805 GATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGC 125864
|||||||| | || || || || || ||||| ||||| || ||||||||||| |
Sbjct 15862518 AATTTCATGGAGATGATCTCGCTGGACGGAAAGACAAACTTCTTTGAGAAGAAGGTGGCC 15862459
Query 125865 GAGTACAAACGCTACGGTGTCG 125886
|||||| | ||| |||||||
Sbjct 15862458 GAGTACCAGCGCATGGGTGTCG 15862437
>seq1
Length=22123056
Score = 224 bits (248), Expect = 1e-53
Identities = 393/570 (69%), Gaps = 14/570 (2%)
Strand=Plus/Minus
Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161
|||||| |||||||||| ||||| || || || | | || |||||||| || ||||||
Sbjct 9147788 TTGCGGAAAAAGATGACGCCGGCGCGTGGTCCGCGCAAGGTTTTGTGCGTGGTTGTGGTC 9147729
Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221
|||||||| |||| ||||| || ||| | | |||| || || || |
Sbjct 9147728 ACAATGTCGGCGTACTGGAAGGGCGATGGTATGTGACCGGCAGCAACCAGACCTGCCACA 9147669
Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281
|| || ||||||||||| || ||| ||| | | ||| |||| ||||| ||||
Sbjct 9147668 TGAGCCATATCGGCCATTAGGTAGGCGCCCACATCGTCGCAGATCTGACGGAAGCGTCCG 9147609
Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341
||||| | | |||| |||||| | |||| || ||||| | | || |||||
Sbjct 9147608 TAGTCGAGCAGGCGAGAATAGCACGAGATGCCAGCGATGATGATCTGCGGCTTGAAAGCC 9147549
Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401
||||| |||||| || ||| | ||||| | | || ||| || | ||||||||||
Sbjct 9147548 TTGGCCGCCTCGGCCAGCTTGTCGTAGTCAATAATGCCCGTCACGGGGTTCACCTTGTAC 9147489
Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA--CGT----------TGCGGAATCCG 127449
|||||||| ||||| |||| || || || || | ||| || ||| |||
Sbjct 9147488 GGCATGCTCTCGAAGAAGATCGAGGTGGCCGAGATCCGTTTGGTGGCCGTGAAGAAGCCG 9147429
Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509
|||||||| || || || ||||||||||| || |||||||| | ||||||| | |
Sbjct 9147428 TGCGTCAGATGACCGCCATCGGGCAGATCCAGGCCCATGATGCGGTCGTGCGGACGACAG 9147369
Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569
| || || |||| | |||||| ||||||||||| || || ||| ||| |||
Sbjct 9147368 ACGCCCACATAGGCGGCCATATTGGCCGGAGAGCCCGAGTATGGCTGGACATTCACGCCC 9147309
Query 127570 CATTCGGACTCGTTCAAATTGAA-CGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628
|| || |||||||| |||||| |||| | | |||| ||| || ||||| |||||
Sbjct 9147308 CACTCCTCCTCGTTCAGATTGAAGAGCTC-ACGGCCGCGCTTCTGGGCCAGCAGCTCGAT 9147250
Query 127629 GCGATCGATAAACTCGTTACCACCATAGTA 127658
||| || || |||||||| || ||||||||
Sbjct 9147249 GCGGTCAATGAACTCGTTGCCGCCATAGTA 9147220
>seq5
Length=28826359
Score = 199 bits (220), Expect = 6e-46
Identities = 373/544 (69%), Gaps = 8/544 (1%)
Strand=Plus/Minus
Query 70066 GGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGA 70125
||| |||||||| ||||| || || || |||||| | |||| || || | ||||
Sbjct 2480606 GGGAGATCTGGGTCCAGTCTATGGCTTTCAGTGGCGTCACTTTGGTGCCGAATATGGCAC 2480547
Query 70126 CTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTC 70184
||||| ||||| || |||| | || ||||||| | ||| | ||||||||
Sbjct 2480546 TTGCGACGATGACTACAGCGGCAAGGGCATCGACCAATTGC-GCCAAGTAATTGACACCA 2480488
Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244
||| | ||||| | ||| | | ||| | |||| |||||||||| || | |
Sbjct 2480487 TCAGGCATAATCCGTCCGATCGTCGCATCATCATGTCTGCATGGAATCCCCTGGACATAC 2480428
Query 70245 ACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC---TCGTA---CGATG 70298
| |||||||||| || || || || ||| |||| ||||| ||| ||| | | |
Sbjct 2480427 CCAAAATGGCACTCCCGCCCTGCCATTGTCTGGCACAGTTCTACGTCTCGCAGACCCGCG 2480368
Query 70299 GCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTA 70358
| | |||| ||| |||||||| | || |||||||||||||| || || || || |
Sbjct 2480367 GAGAGCTGTCCTGCCAGCTGTATCAGCGCAGCGCCGACATGGGCCTTGGCGTGCCATTCA 2480308
Query 70359 ACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGC 70418
|||| ||| ||| | || |||| ||||||| || || | || ||| |||| ||
Sbjct 2480307 ACATCGCATCCTACGCCCTGCTGACCTACATGATAGCCCATGTAACTGGCTTGAAGACGG 2480248
Query 70419 ACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAA 70478
||| || | |||||||| ||||||||||| |||||| | || || | || ||| | |
Sbjct 2480247 GCGACTTTATCCACACCATGGGCGACGCTCATGTGTATCTTAACCATGTTGATCCACTGA 2480188
Query 70479 AGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTG 70538
||| ||| || |||| ||||| | || ||||| |||||| | | || | ||||
Sbjct 2480187 AGGAGCAGCTGAAACGCAAGCCGCGGCCGTTTCCAAAGCTGAACATCAAGCGACAGGTTG 2480128
Query 70539 AAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTA 70598
| || ||||| |||| ||||||||| || || | |||||||| ||||||||||
Sbjct 2480127 AGAACATTGAAGATTTTCGGTACGAAGACTTCGAGATCATCGGTTACGAGCCATACCCTA 2480068
Query 70599 AGAT 70602
||||
Sbjct 2480067 AGAT 2480064
>seq2
Length=30136903
Score = 95.1 bits (104), Expect = 2e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 50135 TGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGAT 50194
||||| || || |||| ||||||||||| || | || || || || || ||||||
Sbjct 20082129 TGGCCGGTGCAGAATATCATCTACACGGCCACCCTGCCCTCGGCTCTGACGGGGGCCGAT 20082070
Query 50195 TTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGC 50254
|| |||| || || | ||||||||||||||| | || | || || ||||| | |||
Sbjct 20082069 GTGGCCATTTTTGCCTCATGCTTTGCCTACATTTCGGACATATCCACGCTGGAGCAGCGC 20082010
Query 50255 ACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCG 50314
|| | || ||| ||| ||||||| || || ||||| | ||||| || || |||||
Sbjct 20082009 ACCATCCGGGTGACCATATTGGATGTGGTGTATCTGAGTGCCATGCCCACGGGCGTGGCA 20081950
Query 50315 ATCGG 50319
||||
Sbjct 20081949 CTCGG 20081945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741059144420560
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