Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 255 9e-63 seq1 224 1e-53 seq5 199 6e-46 seq2 95.1 2e-14 >seq4 Length=20862834 Score = 255 bits (282), Expect = 9e-63 Identities = 578/862 (67%), Gaps = 38/862 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| |||||||||| ||||| || |||||||| ||||| || |||||| | || | Sbjct 15863273 AGGCGGAGGCCTCCTTCTGGACCGTGGAAGAGGTGGATCTATCGAAGGACGCGACGGACT 15863214 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 ||| | ||| | ||||| | ||||| | ||||| || || | | |||||||| | Sbjct 15863213 GGG---CCCGTCTCACTGACAACGAGCGCTACTTTATCTCCCATGTGCTAGCCTTCTTCG 15863157 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217 | | ||| || || || || ||||| |||||| | || || ||| ||| || | Sbjct 15863156 CTGCCTCGGACGGCATTGTTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGA 15863097 Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277 | | |||| ||||| ||||| ||||| || || ||||| |||||||| || | Sbjct 15863096 TCACGGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGA 15863037 Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA---CGTAAACACATGCTCT 125334 ||||| || ||||||| ||||| || || ||||| || | || || || Sbjct 15863036 TGTACAGCGTGCTCATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTC- 15862978 Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGG 125390 || || || || || ||||| || ||||| ||||| | |||| || Sbjct 15862977 --AATGCTATTGAGACCATGCCGGCT----GTAAAGCGCAAGGCGGACTGGGCCATGTCC 15862924 Query 125391 TGGATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTA 125447 ||||| || | || || | || ||||| | | | || || || ||||| Sbjct 15862923 TGGAT--ATC-CTCGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTG 15862867 Query 125448 GAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507 || || ||||||||| || || ||||| | ||||||||||| |||||||| || ||| Sbjct 15862866 GAAGGAATCTTCTTTAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTC 15862807 Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567 |||||||| ||||| | |||||| | || || || ||||| || || ||||| ||| Sbjct 15862806 ATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGAC 15862747 Query 125568 TTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC---AGCGATGAA 125624 ||||| | || ||| || || |||| ||||||| | |||| || Sbjct 15862746 TTTGCGGTGCTCATGTATC---ACCATCT--------AGTGCAGCGGCCCAAGCGG-GAG 15862699 Query 125625 AAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCC 125684 ||||| | || | | ||||| ||| || || || ||||| || || ||| || Sbjct 15862698 CGCATCATCGAGATCATCAGGGATGCTGTGGAAATCGAGCAGGAGTTCCTCACTGAAGCC 15862639 Query 125685 CTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTG 125744 || || |||| |||||||||||||||| || |||| | ||||||| ||||| ||| Sbjct 15862638 CTGCCCGTCAATTTGATTGGCATGAACTGTGTTCTCATGTCCCAGTACATCGAGTTCGTG 15862579 Query 125745 GCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTT 125804 || ||||| || || ||| | || | ||||| |||||| | |||||||| || Sbjct 15862578 GCCGATCGGCTGCTAGGGGAGCTCGGTGTGGGTAAGATCTACAACACTAAGAATCCTTTC 15862519 Query 125805 GATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGC 125864 |||||||| | || || || || || ||||| ||||| || ||||||||||| | Sbjct 15862518 AATTTCATGGAGATGATCTCGCTGGACGGAAAGACAAACTTCTTTGAGAAGAAGGTGGCC 15862459 Query 125865 GAGTACAAACGCTACGGTGTCG 125886 |||||| | ||| ||||||| Sbjct 15862458 GAGTACCAGCGCATGGGTGTCG 15862437 >seq1 Length=22123056 Score = 224 bits (248), Expect = 1e-53 Identities = 393/570 (69%), Gaps = 14/570 (2%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| |||||||||| ||||| || || || | | || |||||||| || |||||| Sbjct 9147788 TTGCGGAAAAAGATGACGCCGGCGCGTGGTCCGCGCAAGGTTTTGTGCGTGGTTGTGGTC 9147729 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||||||| |||| ||||| || ||| | | |||| || || || | Sbjct 9147728 ACAATGTCGGCGTACTGGAAGGGCGATGGTATGTGACCGGCAGCAACCAGACCTGCCACA 9147669 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || ||||||||||| || ||| ||| | | ||| |||| ||||| |||| Sbjct 9147668 TGAGCCATATCGGCCATTAGGTAGGCGCCCACATCGTCGCAGATCTGACGGAAGCGTCCG 9147609 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||| | | |||| |||||| | |||| || ||||| | | || ||||| Sbjct 9147608 TAGTCGAGCAGGCGAGAATAGCACGAGATGCCAGCGATGATGATCTGCGGCTTGAAAGCC 9147549 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 ||||| |||||| || ||| | ||||| | | || ||| || | |||||||||| Sbjct 9147548 TTGGCCGCCTCGGCCAGCTTGTCGTAGTCAATAATGCCCGTCACGGGGTTCACCTTGTAC 9147489 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA--CGT----------TGCGGAATCCG 127449 |||||||| ||||| |||| || || || || | ||| || ||| ||| Sbjct 9147488 GGCATGCTCTCGAAGAAGATCGAGGTGGCCGAGATCCGTTTGGTGGCCGTGAAGAAGCCG 9147429 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 |||||||| || || || ||||||||||| || |||||||| | ||||||| | | Sbjct 9147428 TGCGTCAGATGACCGCCATCGGGCAGATCCAGGCCCATGATGCGGTCGTGCGGACGACAG 9147369 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | || || |||| | |||||| ||||||||||| || || ||| ||| ||| Sbjct 9147368 ACGCCCACATAGGCGGCCATATTGGCCGGAGAGCCCGAGTATGGCTGGACATTCACGCCC 9147309 Query 127570 CATTCGGACTCGTTCAAATTGAA-CGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628 || || |||||||| |||||| |||| | | |||| ||| || ||||| ||||| Sbjct 9147308 CACTCCTCCTCGTTCAGATTGAAGAGCTC-ACGGCCGCGCTTCTGGGCCAGCAGCTCGAT 9147250 Query 127629 GCGATCGATAAACTCGTTACCACCATAGTA 127658 ||| || || |||||||| || |||||||| Sbjct 9147249 GCGGTCAATGAACTCGTTGCCGCCATAGTA 9147220 >seq5 Length=28826359 Score = 199 bits (220), Expect = 6e-46 Identities = 373/544 (69%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 70066 GGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGA 70125 ||| |||||||| ||||| || || || |||||| | |||| || || | |||| Sbjct 2480606 GGGAGATCTGGGTCCAGTCTATGGCTTTCAGTGGCGTCACTTTGGTGCCGAATATGGCAC 2480547 Query 70126 CTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTC 70184 ||||| ||||| || |||| | || ||||||| | ||| | |||||||| Sbjct 2480546 TTGCGACGATGACTACAGCGGCAAGGGCATCGACCAATTGC-GCCAAGTAATTGACACCA 2480488 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 ||| | ||||| | ||| | | ||| | |||| |||||||||| || | | Sbjct 2480487 TCAGGCATAATCCGTCCGATCGTCGCATCATCATGTCTGCATGGAATCCCCTGGACATAC 2480428 Query 70245 ACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC---TCGTA---CGATG 70298 | |||||||||| || || || || ||| |||| ||||| ||| ||| | | | Sbjct 2480427 CCAAAATGGCACTCCCGCCCTGCCATTGTCTGGCACAGTTCTACGTCTCGCAGACCCGCG 2480368 Query 70299 GCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTA 70358 | | |||| ||| |||||||| | || |||||||||||||| || || || || | Sbjct 2480367 GAGAGCTGTCCTGCCAGCTGTATCAGCGCAGCGCCGACATGGGCCTTGGCGTGCCATTCA 2480308 Query 70359 ACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGC 70418 |||| ||| ||| | || |||| ||||||| || || | || ||| |||| || Sbjct 2480307 ACATCGCATCCTACGCCCTGCTGACCTACATGATAGCCCATGTAACTGGCTTGAAGACGG 2480248 Query 70419 ACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAA 70478 ||| || | |||||||| ||||||||||| |||||| | || || | || ||| | | Sbjct 2480247 GCGACTTTATCCACACCATGGGCGACGCTCATGTGTATCTTAACCATGTTGATCCACTGA 2480188 Query 70479 AGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTG 70538 ||| ||| || |||| ||||| | || ||||| |||||| | | || | |||| Sbjct 2480187 AGGAGCAGCTGAAACGCAAGCCGCGGCCGTTTCCAAAGCTGAACATCAAGCGACAGGTTG 2480128 Query 70539 AAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTA 70598 | || ||||| |||| ||||||||| || || | |||||||| |||||||||| Sbjct 2480127 AGAACATTGAAGATTTTCGGTACGAAGACTTCGAGATCATCGGTTACGAGCCATACCCTA 2480068 Query 70599 AGAT 70602 |||| Sbjct 2480067 AGAT 2480064 >seq2 Length=30136903 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 50135 TGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGAT 50194 ||||| || || |||| ||||||||||| || | || || || || || |||||| Sbjct 20082129 TGGCCGGTGCAGAATATCATCTACACGGCCACCCTGCCCTCGGCTCTGACGGGGGCCGAT 20082070 Query 50195 TTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGC 50254 || |||| || || | ||||||||||||||| | || | || || ||||| | ||| Sbjct 20082069 GTGGCCATTTTTGCCTCATGCTTTGCCTACATTTCGGACATATCCACGCTGGAGCAGCGC 20082010 Query 50255 ACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCG 50314 || | || ||| ||| ||||||| || || ||||| | ||||| || || ||||| Sbjct 20082009 ACCATCCGGGTGACCATATTGGATGTGGTGTATCTGAGTGCCATGCCCACGGGCGTGGCA 20081950 Query 50315 ATCGG 50319 |||| Sbjct 20081949 CTCGG 20081945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059144420560