Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 4e-14 seq5 82.4 6e-11 >seq2 Length=30136903 Score = 93.3 bits (102), Expect = 4e-14 Identities = 219/324 (68%), Gaps = 5/324 (2%) Strand=Plus/Minus Query 20956 CCGCAGCCCAGCCGGCCGCCCGAGTTGCCCGTAACCTTGCTAAGCGGGTGGTCTGTTAAG 21015 |||||||| | ||| |||| | ||||| || |||||| ||| ||| | | Sbjct 15750333 CCGCAGCCAATACGGGCGCCGGCATTGCCGGTGGTCTTGCTTAGCTCGTGACCACCCTTG 15750274 Query 21016 CCGAGGTCATC-GCGATCCGTGTGCACTACCAAGCTACGACCCAATATGCTGAGCGGACC 21074 || | |||||| ||| || | ||| || |||| | | || || | |||||| | ||| Sbjct 15750273 CCCAAGTCATCAGCG-TCGGCGTGGACGACCACGGTGCGTCCTATGATGCTGTCGGCACC 15750215 Query 21075 AAACAAGCTCATCACGTTGTCGCTCATGTCGACAGGCGTCAGCGCGGTGCAGCCCGCGGA 21134 |||| | ||| |||| | ||| ||| | ||| | || || || || || | Sbjct 15750214 GAACAGCGTGATCTTCGAGTCGGTGATGCTGACGGCCGTGGG-GCTGT-CA-CCGGCCGC 15750158 Query 21135 GCGGACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTG 21194 ||| |||||||| ||||| | ||| || | | || ||| || ||||| | | Sbjct 15750157 CTGGATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCATCGGTGGGGGCACCGTGCTCCTT 15750098 Query 21195 GTGCGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTC 21254 || | ||||||||||| ||||| ||| ||||||||||| || |||| |||||||| Sbjct 15750097 GTTCCGGGGGTTAAAGTGGGGGCCGGACGACATGCAGCCGTTGGTGTTGTCCCCGAACTC 15750038 Query 21255 GTGAACGTGAAAGCCGTGCAGTCC 21278 ||| || || || ||||||||||| Sbjct 15750037 GTGCACATGGAATCCGTGCAGTCC 15750014 >seq5 Length=28826359 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || |||||||| || || ||||| || | || || | | ||||| Sbjct 28457470 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 28457529 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| || | || || | ||||||||| ||| | |||||| ||||| Sbjct 28457530 CAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 28457589 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | ||| || || ||||| || | ||| ||||| || Sbjct 28457590 GATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTT 28457649 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || || | |||||| || || ||||||||||| Sbjct 28457650 GCCAGTGAGAGTTTTCACGAAGATTTGCATTTT 28457682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414572769684364