Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq5 187 6e-42
seq2 116 9e-21
seq1 113 1e-19
seq4 89.7 1e-12
>seq5
Length=28826359
Score = 187 bits (206), Expect = 6e-42
Identities = 172/218 (79%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
|||| |||||||| ||| || || || || |||||||| ||||| ||||| || ||||
Sbjct 15755900 AGCCGAAGTACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGG 15755959
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||| | ||| || ||||| || || | | ||||||||| ||||| |||||||||
Sbjct 15755960 CCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCT 15756019
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|| ||||| ||||| ||||| |||||||| | |||||| |||||| ||||| || ||
Sbjct 15756020 TTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTT 15756079
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || || || || |||||||| ||||||||
Sbjct 15756080 ATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 15756117
>seq2
Length=30136903
Score = 116 bits (128), Expect = 9e-21
Identities = 147/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || ||||| | || || || || || || ||
Sbjct 19092582 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCG 19092641
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| || ||||| || ||||| || || ||||| ||||| || ||
Sbjct 19092642 GCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC 19092701
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||| ||| || || ||||| || || || || || ||||| | |||
Sbjct 19092702 ACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTT 19092761
Query 104543 TTTACAAATATCTGCATTTTGT 104564
|| ||||| |||||||||||||
Sbjct 19092762 TTCACAAAGATCTGCATTTTGT 19092783
Score = 104 bits (114), Expect = 5e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || ||||| | || || || || || || |||
Sbjct 19092354 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCA 19092413
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| || || || || ||||| || || ||||| ||||| || ||
Sbjct 19092414 GCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC 19092473
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||| ||| || || ||||| || || || || || || || || ||
Sbjct 19092474 ACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCGGTCAGAGTC 19092533
Query 104543 TTTACAAATATCTGCAT 104559
|| || |||||||||||
Sbjct 19092534 TTCACGAATATCTGCAT 19092550
>seq1
Length=22123056
Score = 113 bits (124), Expect = 1e-19
Identities = 149/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416
|| || || || || ||||| || || ||||| || | ||| | ||||| || || ||
Sbjct 6630557 TGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGC 6630498
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || || || || | | ||| ||||| || || || || || || ||||| |||||
Sbjct 6630497 TTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTA 6630438
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|| || ||||| || | ||| || || || ||||| || || || ||||| |||||
Sbjct 6630437 GCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTC 6630378
Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563
|| ||||| || || ||||||||||||
Sbjct 6630377 AGGGTTTTCACGAAAATCTGCATTTTG 6630351
>seq4
Length=20862834
Score = 89.7 bits (98), Expect = 1e-12
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198
|||| ||||| || || ||||| || |||||| || |||||| | |||||||||
Sbjct 15862883 TTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGCGGCAGCTTTGCCTCGATCTTTTGGC 15862824
Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258
||||||| | || || ||||| || | || ||||| ||||| |||| | | ||||
Sbjct 15862823 TGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGACG 15862764
Query 269259 AAGGTTTACACTGCGACTTCGC 269280
||||| | ||||||||||| ||
Sbjct 15862763 AAGGTCTTCACTGCGACTTTGC 15862742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151398311486248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |