Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 >seq5 Length=28826359 Score = 104 bits (114), Expect = 2e-17 Identities = 177/255 (69%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTG 5298 ||| || || ||||| || || || || |||||||| |||| || ||| | Sbjct 22257114 TCCTGTTGAGCCGAAACCGTCCTCCCCACGTTCGGTGTCTTCCAGCTTGTCGACCATTAC 22257173 Query 5299 AACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAAC 5358 | | |||||| | ||||| ||||| || | |||||| |||| ||||| ||| || Sbjct 22257174 CAGTTCTGGGTAGAAGATGCGCTCGCAAATGAACTGAGCAATCCGATCTCCAACCTTCAC 22257233 Query 5359 CTCAAAGTCGCTGTTTCCGAA--GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCT 5416 ||| ||||| || || || ||| || || || || || | ||||| ||||||||| Sbjct 22257234 CTCGAAGTCC--GTATCAGAGTGGTTGAAGAGAACGACACCCAGGTTGCCGCGGTAGTCT 22257291 Query 5417 TCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGT 5476 ||||| | ||||| |||||||| || || |||| || || || ||||| || || || Sbjct 22257292 TCGTCCACCACGCCGGCGCCCACATCAATGAAGTTCTTCACGGCCAGGCCAGAGCGAGGA 22257351 Query 5477 GCTATGCGTCCGTAG 5491 || | ||| || ||| Sbjct 22257352 GCGACGCGACCATAG 22257366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447750366418720