Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq5 143 2e-29 >seq5 Length=28826359 Score = 143 bits (158), Expect = 2e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 5581 GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCC 5640 ||||||||| || | ||| || || || || || ||| |||||||| || | | Sbjct 22257192 GCGCTCGCAAATGAACTGAGCAATCCGATCTCCAACCTTCACCTCGAAGTCCGTATCAGA 22257251 Query 5641 GAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCC 5700 | |||||| || || || |||| ||||||||||||||| |||| | |||||| ||||| Sbjct 22257252 GTGGTTGAAGAGAACGACACCCAGGTTGCCGCGGTAGTCTTCGTCCACCACGCCGGCGCC 22257311 Query 5701 CACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCC 5760 ||| || ||||||| ||| || |||||||| ||||| ||||| ||||| || ||| | || Sbjct 22257312 CACATCAATGAAGTTCTTCACGGCCAGGCCAGAGCGAGGAGCGACGCGACCATAGGAGCC 22257371 Query 5761 ATCGGGAAGCTGTATCTGCAGGTCCGT 5787 || |||| || | ||||||||| || Sbjct 22257372 CTCCGGAACTTGAACCTGCAGGTCGGT 22257398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430054368552272