Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3 125 4e-24 seq4 114 7e-21 seq1 104 1e-17 >seq3 Length=33007066 Score = 125 bits (138), Expect = 4e-24 Identities = 85/95 (89%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 22623622 AAAAAATCAGTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 22623681 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG-TCGACGA 11537 ||||| ||||||||||||||||||||| | ||||| Sbjct 22623682 GCTCTAACCAACTGAGCTAATGGGCCGATGGACGA 22623716 >seq4 Length=20862834 Score = 114 bits (126), Expect = 7e-21 Identities = 78/88 (89%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 11445 AAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| ||| |||||||||| |||||||||| |||||||||||||||||||||| Sbjct 19018592 AAAAATAAAAAGTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 19018651 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 19018652 ACGCTCTAACCAACTGAGCTAATGGGCC 19018679 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 16395255 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 16395196 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 16395195 TGAGCTAATGGGCC 16395182 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 17175863 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 17175922 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 17175923 TGAGCTAATGGGCC 17175936 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 19021376 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 19021435 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 19021436 TGAGCTAATGGGCC 19021449 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 17181218 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 17181277 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 17181278 TGAGCTAATGGGCC 17181291 Score = 104 bits (114), Expect = 1e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| ||||||||| |||||||||| || ||||||||||||||||||||| Sbjct 17181856 AAAAAGTCATCATGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGAC 17181797 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| ||||||||||||||| Sbjct 17181796 GCTCTAACCAGCTGAGCTAATGGGCC 17181771 Score = 104 bits (114), Expect = 1e-17 Identities = 85/103 (83%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTT 11486 |||||| ||| || | | |||||| | |||||||| |||||||||| || |||| Sbjct 19021682 AAATATTGAAAAAAAAGAGGATCAAACTCTGGCCCATGGGGGGATCGAACCCGCGGCCTT 19021741 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| |||| ||||||||||||||| Sbjct 19021742 CGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 19021784 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| || |||||||||||||||||||||||||| |||| | Sbjct 19018823 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 19018882 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 19018883 TGAGCTAATGGGCC 19018896 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| || |||||||||||||||||||||||||| |||| | Sbjct 19021182 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 19021123 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 19021122 TGAGCTAATGGGCC 19021109 >seq1 Length=22123056 Score = 104 bits (114), Expect = 1e-17 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||||| | |||||||| |||||||||| || ||||||||||||||||||||| Sbjct 20623966 AAAAAATCACCT-GGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGAC 20623908 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| ||||||||||||||| Sbjct 20623907 GCTCTAACCAGCTGAGCTAATGGGCC 20623882 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261491180878456