Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq3 125 4e-24
seq4 114 7e-21
seq1 104 1e-17
>seq3
Length=33007066
Score = 125 bits (138), Expect = 4e-24
Identities = 85/95 (89%), Gaps = 1/95 (1%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 22623622 AAAAAATCAGTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 22623681
Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG-TCGACGA 11537
||||| ||||||||||||||||||||| | |||||
Sbjct 22623682 GCTCTAACCAACTGAGCTAATGGGCCGATGGACGA 22623716
>seq4
Length=20862834
Score = 114 bits (126), Expect = 7e-21
Identities = 78/88 (89%), Gaps = 3/88 (3%)
Strand=Plus/Plus
Query 11445 AAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
|||||| ||| |||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 19018592 AAAAATAAAAAGTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 19018651
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| ||||||||||||||||||||
Sbjct 19018652 ACGCTCTAACCAACTGAGCTAATGGGCC 19018679
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 16395255 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 16395196
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 16395195 TGAGCTAATGGGCC 16395182
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 17175863 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 17175922
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 17175923 TGAGCTAATGGGCC 17175936
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 19021376 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 19021435
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 19021436 TGAGCTAATGGGCC 19021449
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 17181218 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 17181277
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 17181278 TGAGCTAATGGGCC 17181291
Score = 104 bits (114), Expect = 1e-17
Identities = 74/86 (86%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||| ||| ||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 17181856 AAAAAGTCATCATGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGAC 17181797
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||| |||||||||||||||
Sbjct 17181796 GCTCTAACCAGCTGAGCTAATGGGCC 17181771
Score = 104 bits (114), Expect = 1e-17
Identities = 85/103 (83%), Gaps = 2/103 (2%)
Strand=Plus/Plus
Query 11429 AAATATAGAATTAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTT 11486
|||||| ||| || | | |||||| | |||||||| |||||||||| || ||||
Sbjct 19021682 AAATATTGAAAAAAAAGAGGATCAAACTCTGGCCCATGGGGGGATCGAACCCGCGGCCTT 19021741
Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||||| |||| |||||||||||||||
Sbjct 19021742 CGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 19021784
Score = 100 bits (110), Expect = 1e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| |||||||||| || |||||||||||||||||||||||||| |||| |
Sbjct 19018823 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 19018882
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 19018883 TGAGCTAATGGGCC 19018896
Score = 100 bits (110), Expect = 1e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| |||||||||| || |||||||||||||||||||||||||| |||| |
Sbjct 19021182 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 19021123
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 19021122 TGAGCTAATGGGCC 19021109
>seq1
Length=22123056
Score = 104 bits (114), Expect = 1e-17
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||||| | |||||||| |||||||||| || |||||||||||||||||||||
Sbjct 20623966 AAAAAATCACCT-GGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGAC 20623908
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||| |||||||||||||||
Sbjct 20623907 GCTCTAACCAGCTGAGCTAATGGGCC 20623882
Lambda K H
0.638 0.409 0.919
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261491180878456
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |