Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3 172 9e-39 >seq3 Length=33007066 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| ||| || ||||||||||| || ||||| ||||| ||||| Sbjct 15151497 CGCTAAGCGTCATCGCAAGGTTCTGCGTGATAACATCCAGGGTATCACGAAGCCCGCTAT 15151438 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||||||||| || || || ||| |||| ||| | |||| || || | Sbjct 15151437 CCGCCGTTTGGCTCGTCGTGGCGGTGTAAAACGTATCTCGGGACTCATCTACGAGGAAAC 15151378 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| | || | | | |||||||| |||||| || ||| ||||| Sbjct 15151377 TCGTGGAGTGCTGAAAGTGTTTTTGGAAAACGTTATCCGTGATGCCGTCACCTACACCGA 15151318 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| ||||| |||||||| | || ||||| |||| | ||||| Sbjct 15151317 ACATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTGTATGCTCTGAAGAGACAAGG 15151258 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || ||||| || ||||| Sbjct 15151257 CCGCACGCTGTACGGTTTCGGCGGTTAA 15151230 Score = 116 bits (128), Expect = 6e-22 Identities = 109/136 (80%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || ||||||| | |||| || ||||||||||| ||||||||||||||||| || Sbjct 21623386 GCCAAACGCCATCGCA-AGGTCTTGCGTGATAACATCCAGGGAATCACCAAGCCAGCCAT 21623444 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||| ||||| || ||||| |||||| | || || ||| |||| ||||| | Sbjct 21623445 TCGTCGTCTGGCCCGTCGCGGCGGAGTAAAGCGTATTTCAGGCTTGATCTACGAAGAAAC 21623504 Query 16552 TCGTGATGTTTTGAAG 16567 || | ||| |||||| Sbjct 21623505 CCGAGGTGTCTTGAAG 21623520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075194514158