Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5 551 7e-152 seq4 138 1e-27 >seq5 Length=28826359 Score = 551 bits (610), Expect = 7e-152 Identities = 1260/1878 (67%), Gaps = 25/1878 (1%) Strand=Plus/Minus Query 61985 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62044 |||||| | || ||||| || | || || ||||| || |||| |||||||||||| Sbjct 15308262 CTTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCC 15308203 Query 62045 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62104 |||||||| || |||| | ||||||| || || | ||| || | || Sbjct 15308202 GGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGG 15308143 Query 62105 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62164 ||||||| || | ||| | || ||||||||||| || || || || || || ||||| Sbjct 15308142 CTCTGCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGC 15308083 Query 62165 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62223 |||||| || | | ||| || ||||||||| | ||||||||||| |||| || | Sbjct 15308082 CATTTTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCG-AACCT 15308024 Query 62224 CTTCTGGAAG-GTTTGTAT-TCT-GAATGGATCCACCATCTGCCA-TAATCCTATTCTTG 62279 || |||| |||| || ||| ||||||| || || ||| | | || |||| || Sbjct 15308023 TTTGGGGAATAGTTTCAATATCTTGAATGGAGCC-CCTGCTGGAAATTATTTTATTTTTC 15307965 Query 62280 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62339 |||||||||| |||||| | ||| |||||| | || | | ||| |||| || ||| Sbjct 15307964 ATCTCATCATCCCATAAGTCCAACTCTGTTAAATCCCTCAATAAATGATGATTGACCACT 15307905 Query 62340 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62399 |||||||| ||||| ||||||| | || |||||||| ||||||| ||||| | || Sbjct 15307904 TGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGAT 15307845 Query 62400 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62459 || ||||| |||| |||||| ||||| ||||| || ||||| || || || || || | Sbjct 15307844 TCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAA 15307785 Query 62460 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 62519 || |||| |||| || | || | ||||| || || ||||| ||| || | || Sbjct 15307784 TTCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCCCATAGGTTCGTT 15307725 Query 62520 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62578 || ||||||||| || || || | | || |||| |||| Sbjct 15307724 GGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACT-TCCTTCATA 15307666 Query 62579 TGTATCGTATGGTCCT--TCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636 || || ||||| || | ||| ||| ||||||||||| || |||| || || || Sbjct 15307665 GGTTTCATATGGACCAAATGCTTG--AGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAA 15307608 Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 ||||| ||||| || || | | |||| | ||||| ||| ||| | ||| || Sbjct 15307607 TAAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAA 15307548 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 | | ||| || ||||| |||| ||||||| ||| |||||||| || | ||| || Sbjct 15307547 CGCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTT 15307488 Query 62757 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62816 ||| || | | |||||||| | ||| ||||| || || ||||||||||| || ||| Sbjct 15307487 AAATTGGACTTCTTGGCTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTTGTTAAGA 15307428 Query 62817 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCT 62873 ||| || ||| |||| || || || | ||| |||||| | | | || Sbjct 15307427 TTTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTTCTGCT 15307368 Query 62874 ATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62933 |||| |||||||||| || | || || | ||| || || || | ||||| || | Sbjct 15307367 GTTACGAACATGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAGGTGCT 15307308 Query 62934 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 62993 | || | | || || || || | |||||| || || ||||| || | |||||||||| Sbjct 15307307 GAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGA 15307248 Query 62994 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63053 || |||||| | || || | ||||||| |||| ||| |||| |||||||||| | || Sbjct 15307247 TTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCACTTGC 15307188 Query 63054 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTC 63112 ||||||||||| || ||| | | | || | | | | |||| | | ||||| | Sbjct 15307187 GATTCTATAATGGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTCGCACGTCCTT-C 15307129 Query 63113 TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 63172 | || ||| ||| | | ||| || | || |||||||||| | | ||||| Sbjct 15307128 TTGCTCATATTTGACATAGAGTTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAGG 15307069 Query 63173 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63232 ||||| || ||||||||||| ||||| | | | ||| || |||||||| || || Sbjct 15307068 ACATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCTCAACACGTTTCATGAAAAG 15307009 Query 63233 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 63292 |||||||||||| | ||| ||| ||||| | | || | ||| || ||||| || || Sbjct 15307008 ATCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCTCGGTTTTCTTCTTTTCCAGTGTT 15306949 Query 63293 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63352 |||| || || | ||| | | || ||| |||||||| || || || || || || | Sbjct 15306948 TCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAA 15306889 Query 63353 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63412 | ||||| | ||| ||||||||||| | |||| ||| |||||| ||||||| Sbjct 15306888 GGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGAGCCACATTATTAAAAACTCT 15306829 Query 63413 CAACATTGGAA-TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGG 63471 |||||||||| |||| || || || |||| || || || | || | | || | | Sbjct 15306828 TAACATTGGAACTAAT-CCATTCGACGTACCGTTCGTTCCACATATTGAAGTGCCTTTAG 15306770 Query 63472 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63531 ||||||| | | | ||| || ||||| ||||| ||| || || | ||| ||| Sbjct 15306769 CACGAAT-GCAATGAACATTAGTCCGATTCCACCTGCTGATTTGGAAATCAGTGCACATT 15306711 Query 63532 GTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGA--TCATGTTAAGTAGAAAACA 63589 ||| | | | | | ||||| || || ||| ||| |||| | | |||||||| Sbjct 15306710 GTTCAACTGATTTAAAAATACCTTCAATTGAATC--CGAATTCATTGTCAAAAGAAAACA 15306653 Query 63590 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63649 |||| ||| | ||| | || | ||| ||| | || || || || |||||||| Sbjct 15306652 CGAGGACAATTGAGGTCGATTTGTAGCAGCAGCAAAAAGCGTTGGCGAGGCATGCGTAAA 15306593 Query 63650 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63709 || |||||| ||||| ||||| || || | || | || ||||| | |||||| Sbjct 15306592 GTATCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGCATCAATATCGTCTCCATGAAT 15306533 Query 63710 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63769 || | ||||| ||||| | |||||| || || | ||| | || || ||||| || Sbjct 15306532 ACCAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCTGCAATTTTCCCATTTATCTT 15306473 Query 63770 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63829 | | ||||| || | || ||||| ||||||||||| || ||| ||||| || Sbjct 15306472 AAGTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCAAAATCTCGGTC 15306413 Query 63830 GTAAATAATAACCGAGTT 63847 ||||||||| | ||||| Sbjct 15306412 ATAAATAATAGCAGAGTT 15306395 >seq4 Length=20862834 Score = 138 bits (152), Expect = 1e-27 Identities = 351/532 (66%), Gaps = 3/532 (1%) Strand=Plus/Plus Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366 || || |||||||| ||||| ||||| | || || |||||||| || || || ||| Sbjct 15862742 GCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCG 15862801 Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATT 33426 ||||| || |||||||| || |||||||| || || || || || |||||||||| Sbjct 15862802 GGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTAAAGAAGATT 15862861 Query 33427 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTGTCATG--TATC 33483 ||||| || || ||||||||||||| | ||| || | || || | || | |||| Sbjct 15862862 CCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 15862921 Query 33484 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33543 || ||||| || ||||| |||||| ||||| || || || ||||| || Sbjct 15862922 CAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAAC 15862981 Query 33544 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33603 | |||| || | || | || || || || | | || ||||| || Sbjct 15862982 AAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 15863041 Query 33604 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 33663 || || | || || ||||| ||||| || |||||||| || | ||||| || ||||| Sbjct 15863042 GAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCCGTGATCTGC 15863101 Query 33664 ACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33723 || || || ||| || || ||| ||| || || || || ||||| ||| || || Sbjct 15863102 ACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAG 15863161 Query 33724 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 33783 || || | ||||| ||||| || |||| || || ||| || | Sbjct 15863162 AAGGCTAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGTC 15863221 Query 33784 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 || || |||| ||| || |||||||| ||||| || || ||||| |||| Sbjct 15863222 GCGTCCTTCGATAGATCCACCTCTTCCACGGTCCAGAAGGAGGCCTCCGCCT 15863273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947153278960