Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq4 154 1e-32 seq5 131 2e-25 seq2 84.2 2e-11 >seq4 Length=20862834 Score = 154 bits (170), Expect = 1e-32 Identities = 214/297 (72%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 71678 GATGAACTATGGAATGCTGCTCAGCGACAGCTAC-GCAATGAGGGTAAAATTCACGGATA 71736 ||||| || ||||| |||| |||| ||||| || | ||||| || || ||||||| Sbjct 9425848 GATGACCTGTGGAACTCTGCCCAGCTGCAGCTGGTGCGA-GAGGGCAAGATGCACGGATT 9425790 Query 71737 CCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCT 71796 || ||||||||||||||||| || || ||||||||||| || || ||||||||||| Sbjct 9425789 TCTTCGCATGTACTGGGCCAAGAAAATACTCGAGTGGACGGCCACGCCGGAGCAGGCGCT 9425730 Query 71797 CGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTA 71856 ||||| | || || ||||| | ||||| || ||||| |||||||| || || || Sbjct 9425729 GGAGTACGCGATCCTGCTGAACGACAAGTACAGCCTAGACGGGCGCGATCCCAATGGCTA 9425670 Query 71857 TGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAACGTCAAGT 71916 ||| || ||||||||| |||| | || | ||||||| ||| || || | Sbjct 9425669 TGTGGGCTGCATGTGGTCCATTGGGGGCATACACGATATGGGCTGGAAGGAGCGAGCGAT 9425610 Query 71917 GTTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAATGTGAA 71973 || || || |||||||| ||||| | | || ||| | ||||||||| | ||||| Sbjct 9425609 ATTCGGAAAGATTCGCTACATGAACTATCAAGGATGCAAGCGCAAGTTCGACGTGAA 9425553 >seq5 Length=28826359 Score = 131 bits (144), Expect = 2e-25 Identities = 343/515 (67%), Gaps = 19/515 (4%) Strand=Plus/Minus Query 147449 ATGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAAT--TACTA 147506 ||| ||||||||||||||| | || || || | |||| || |||| |||| | | Sbjct 15307920 ATGATGATTGACCACTTGAAATTCACCAGATAATACTCGTCT--CGTATAAATATTTGTG 15307863 Query 147507 GTAAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATG 147566 ||| | || ||||| || ||||| ||||| | ||| |||||||| | ||| || ||||| Sbjct 15307862 GTATATGGTTCGAATGATTCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATC 15307803 Query 147567 TAAGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCC 147626 || | || || ||||| | | |||||| | || ||| || || | | Sbjct 15307802 GGCGCTACTAACAACGAATTCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGC 15307743 Query 147627 CAGTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAA 147686 || | ||| || | ||| | | | ||| ||||| |||| | |||| || ||| Sbjct 15307742 CAATCCCATAGGT---TCGTTGGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTG 15307686 Query 147687 CTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCG--TGCAGTTTAGCTAGTTCGATAC 147744 ||| |||| ||||| || || | || |||| || ||| || ||| ||||| || Sbjct 15307685 CTTACAGGACTTCCTTCATAGGTTTCATATGGACCAAATGC--TTGAGCAAGTTCACAAC 15307628 Query 147745 TTTGACTTAGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCT 147804 | ||| || ||| ||||||| ||||| | || | || |||||| | || | Sbjct 15307627 TAGCTTCTAGAGCTCCAAAATAAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTT 15307568 Query 147805 CTTGGCTGTCGTAGGGCATATCCA---AAATGGCGAACGTATCCGCAAGTCCTTGAATAC 147861 ||| ||| || ||||| | | || |||| || | || || || |||||||||| Sbjct 15307567 CTTCGCTTTCATAGGGAAAACGCATTAAAATT---AAAGCGTCAGCTAGACCTTGAATAC 15307511 Query 147862 CGATACCGATGGGTCGGTGTCTGAAATTCGA-TGCTTGAGCGCTAGCCAACGGATAAAAA 147920 | |||||||| || || || || ||||| || | |||| || | ||| || ||| | Sbjct 15307510 CTATACCGATTGGACGATGCCTTAAATTGGACTTCTTG-GCTTCTGGCAAAGGGTAATAG 15307452 Query 147921 TTCAAGTCGATAATTTTATTGAGATTATTGGTAAC 147955 || | ||| |||||||| || ||||| |||| ||| Sbjct 15307451 TTGATGTCTATAATTTTGTTAAGATTTTTGGCAAC 15307417 >seq2 Length=30136903 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 115135 TTTTTACAAGAGAGTCCCGAGCATCTACTAAAGATCACGGGCTACATTTTGAACCTACCC 115194 ||||||||| ||| |||| || | || |||| ||| | | || ||| || Sbjct 15749951 TTTTTACAACAGACCAGCGAGGCTCCCGTGAAAGTCACCGGCGAGGTGCTGGGCCTTGCC 15750010 Query 115195 AAAGGCTTGCACGGATTTCATGTTCACGAATTCGGCGACACGAGCAACGGCTGCACGTCT 115254 || || |||||||||| ||||| ||||| ||||| |||| | ||||||||||| ||| Sbjct 15750011 AAGGGACTGCACGGATTCCATGTGCACGAGTTCGGGGACAACACCAACGGCTGCATGTCG 15750070 Query 115255 GCAGGCGAGCATTTTAACCCTACGAACATGGCTCACGGTGCGCCCA 115300 | ||| || |||||||| ||||| || |||||||| |||| Sbjct 15750071 TCCGGCCCCCACTTTAACCCCCGGAACAAGGAGCACGGTGCCCCCA 15750116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478662364100320