Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 223 9e-53 >seq5 Length=28826359 Score = 223 bits (246), Expect = 9e-53 Identities = 719/1110 (65%), Gaps = 11/1110 (1%) Strand=Plus/Plus Query 363387 TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGT 363446 |||||| |||| ||||||| | ||| ||||| ||| | || ||||| | |||| Sbjct 15306434 TATTTT-GGATTTAAGACGCTCGAGCGTTCCTATCTACTTAAGATAAATGGGAAAATTGC 15306492 Query 363447 TGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGA 363506 ||||| || || || ||| | ||||| || ||| ||||||| ||| | ||| |||| Sbjct 15306493 AGAACGTCCACAACACATGCTGATGCGCGTCGCTCTTGGTATTCATGGAGACGATATTGA 15306552 Query 363507 TGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAAC 363566 ||| || | ||||| || || || || || || || ||||| ||| ||||||| Sbjct 15306553 TGCGGCAGTGGAAACTTACAACCTACTGTCTGAACGATACTTTACGCATGCCTCGCCAAC 15306612 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | ||||| || | || || |||| || || |||||| | | |||||| Sbjct 15306613 GCTTTTTGCTGCTGCTACAAATCGACCTCAATTGTCCTCGTGTTTTCTTTTGACAATGAA 15306672 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 ||||| || || ||||| ||| | || || | | ||||| || |||||||| Sbjct 15306673 TTCGGATTCAATTGAAGGTATTTTTAAATCAGTTGAACAATGTGCACTGATTTCCAAATC 15306732 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGCACAGAACAGTTACATTCGC 363744 ||||| ||||| || || | || | || ||||||| | || || || | Sbjct 15306733 AGCAGGTGGAATCGGACTAATGTTC---ATTGCATTCGTGCTAAAGGCACTTCAATATGT 15306789 Query 363745 GGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803 || || || ||| |||||||| | ||||| ||| | | || ||| | ||| || Sbjct 15306790 GGAACGAACGG-TACGTCGAATGGATTAGTTCCAATGTTAAGAGTTTTTAATAATGTGGC 15306848 Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863 | || || || ||||| || ||||| | || || |||||||| ||| | ||||| Sbjct 15306849 TCGATATGTTGATCAGGGAGGTGGAAAAAGACCTGGTGCCTTTGCTATTTATTTAGAGCC 15306908 Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923 ||| | ||| ||||||||||| | || ||| | |||||| |||||||| ||| Sbjct 15306909 CTGGCATTCAGATGTTTTTGAGTTTTTAGACCTCAAAAGAAACACTGGAAAAGAAGAAAA 15306968 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 || ||||||||||| || || || | ||| || |||| | ||| ||||| || || || Sbjct 15306969 CCGAGCACGTGATCTTTTTTACGCTTTATGGATTCCTGATCTTTTCATGAAACGTGTTGA 15307028 Query 363984 GGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATG 364043 |||| | | | |||||| | | || ||||| ||||||| || ||| ||||| || Sbjct 15307029 GGCAAATGAAAGCTGGTCATTGATGTGTCCACATAAATGTCCTGGCCTTCAAGATGTTTG 15307088 Query 364044 GGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGAC 364103 ||| || | | || | || || | || ||||| || ||| || | || Sbjct 15307089 GGGCGAAAAATTTGAAGAACTCTATGTCAAATATGAGCAAGAAGGACGTGCGAATCGAAC 15307148 Query 364104 AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACC 364163 | | || ||| ||||||||||||| || || ||||| | || || || | || Sbjct 15307149 AGTGGAAGCCCAGGCTTTATGGTTTGCCATTATAGAATCGCAAGTGGAAACTGGTAACCC 15307208 Query 364164 CTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 || ||| | | || ||||| ||||| | ||| ||| || || | |||| || || Sbjct 15307209 ATACATGCTTTTTAAGGATTCCTGCAATAGAAAGAGCAATCAACAAAATGTTGGCACTAT 15307268 Query 364224 TCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283 | | || || ||||||| || ||| | || ||| | || || || |||| || || Sbjct 15307269 TAAATGCAGTAATTTATGTACAGAAATTGTCGAGTACTCAGCACCTGATGAGATCGCTGT 15307328 Query 364284 ATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA---AAGATGGTACTTTTGACCA 364340 || || | || || || || || ||| |||| ||| || | ||| Sbjct 15307329 CTGCAATTTAGCTTCAATAGCACTGAACATGTTCGTAACAGCAGAAAAAACGTATGATTT 15307388 Query 364341 CCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAA 364400 | | | | | || |||||| | || | | ||||| |||| |||| |||| Sbjct 15307389 CAAAAAATTAAAAGAAGTAACCAAAACTGTTGCCAAAAATCTTAACAAAATTATAGACAT 15307448 Query 364401 GAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCT 364460 || ||||| || | || |||||| || || ||| | | ||||| || || ||| | Sbjct 15307449 CAACTATTACCCTTTGCCAGAAGCCAAGAAGTCCAATTTAAGGCATCGTCCAATCGGTAT 15307508 Query 364461 TGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 ||| | || || || ||||||| ||| || Sbjct 15307509 AGGTATTCAAGGTCTAGCTGACGCTTTAAT 15307538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353499804692